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Carg23991 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg23991
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionmediator of RNA polymerase II transcription subunit 15a-like isoform X1
Genome locationCarg_Chr11:9802463..9804547
RNA-Seq ExpressionCarg23991
SyntenyCarg23991
Gene Ontology termsGO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0031490 - chromatin DNA binding (molecular function)
InterPro domainsIPR036529 - Coactivator CBP, KIX domain superfamily
IPR036546 - Mediator complex subunit 15, KIX domain
IPR044661 - Mediator of RNA polymerase II transcription subunit 15a/b/c-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588791.1 Mediator of RNA polymerase II transcription subunit 15a, partial [Cucurbita argyrosperma subsp. sororia]2.0e-5299.09Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        MP PMASNQP
Subjt:  MPVPMASNQP

XP_022927778.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita moschata]3.1e-53100Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        MPVPMASNQP
Subjt:  MPVPMASNQP

XP_022927780.1 mediator of RNA polymerase II transcription subunit 15a-like [Cucurbita moschata]1.5e-3978.18Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQP+SRH+IVD+I+ETLKR LPVSGPEGLSE+RKIAVRFEEK+YT +TS+ +Y RKI ++MLT+E    TT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        M  PMASNQP
Subjt:  MPVPMASNQP

XP_023531819.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X1 [Cucurbita pepo subsp. pepo]3.8e-4389.42Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGES VDAGDWRSQLQPDSRHQIVDRIMETLKR+LPVSGPEGLSE+RKIAVRFEEKIYTA+TSE EYRRKI VKMLT+EPNSETTTALP 
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVP
           P
Subjt:  MPVP

XP_023531822.1 mediator of RNA polymerase II transcription subunit 15a-like isoform X3 [Cucurbita pepo subsp. pepo]3.8e-4389.42Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGES VDAGDWRSQLQPDSRHQIVDRIMETLKR+LPVSGPEGLSE+RKIAVRFEEKIYTA+TSE EYRRKI VKMLT+EPNSETTTALP 
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVP
           P
Subjt:  MPVP

TrEMBL top hitse value%identityAlignment
A0A6J1EIJ8 mediator of RNA polymerase II transcription subunit 15a-like7.2e-4078.18Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQP+SRH+IVD+I+ETLKR LPVSGPEGLSE+RKIAVRFEEK+YT +TS+ +Y RKI ++MLT+E    TT ALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        M  PMASNQP
Subjt:  MPVPMASNQP

A0A6J1ELZ0 mediator of RNA polymerase II transcription subunit 15a-like isoform X11.5e-53100Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        MPVPMASNQP
Subjt:  MPVPMASNQP

A0A6J1JEE1 mediator of RNA polymerase II transcription subunit 15a-like isoform X11.0e-3883.5Show/hide
Query:  PAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMAS
        PAQGGE  VDAGDWRSQLQPDSRHQ +++IMETLKRILPVSGPEGLSELRKIA RFEEKIYTA+TSE EY RKI+VKML +EPN ETTTALPSM  PM S
Subjt:  PAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMAS

Query:  NQP
        NQP
Subjt:  NQP

A0A6J1JL76 mediator of RNA polymerase II transcription subunit 15a-like isoform X11.2e-3775.45Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGPAQGGE  VDAGDWRSQL PDSRH+IV+ I+ETLKR +PVSGPEGLSELRKIAVRFEEK+Y A+TS+ +Y RKI ++MLT+E  S TTTALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        M  P++SNQP
Subjt:  MPVPMASNQP

A0A6J1JP13 mediator of RNA polymerase II transcription subunit 15a-like isoform X22.7e-3976.36Show/hide
Query:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        MDSNHLGP QGGESGVDAGDWRSQLQP+SRH+IV++I+ETLKR +PVSGPEGLSELRKIAVRFEEK+Y A+TS+ +Y RKI ++MLT+E  S TTTALPS
Subjt:  MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

Query:  MPVPMASNQP
        M  P++SNQP
Subjt:  MPVPMASNQP

SwissProt top hitse value%identityAlignment
F4I171 Mediator of RNA polymerase II transcription subunit 15a7.0e-2453.21Show/hide
Query:  MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALP
        MD+N+  P+   GE  +D GDWR+QL PDSR +IV++IMETLK+ LP SGPEG++ELR+IA RFEEKI++ + ++ +Y RKI +KMLT+E  S+   A  
Subjt:  MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALP

Query:  SMPVPMASN
        S  +P A+N
Subjt:  SMPVPMASN

Arabidopsis top hitse value%identityAlignment
AT1G15780.1 unknown protein5.0e-2553.21Show/hide
Query:  MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALP
        MD+N+  P+   GE  +D GDWR+QL PDSR +IV++IMETLK+ LP SGPEG++ELR+IA RFEEKI++ + ++ +Y RKI +KMLT+E  S+   A  
Subjt:  MDSNHLGPA-QGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALP

Query:  SMPVPMASN
        S  +P A+N
Subjt:  SMPVPMASN

AT1G15790.1 unknown protein2.7e-1548.78Show/hide
Query:  GDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        GDWR+Q    SR +IV++IMET  + LP   PEG +ELRKIAVRFEEK++  ++++ EY R+I +KML +E  S+      S
Subjt:  GDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS

AT1G15790.2 unknown protein2.7e-1548.78Show/hide
Query:  GDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS
        GDWR+Q    SR +IV++IMET  + LP   PEG +ELRKIAVRFEEK++  ++++ EY R+I +KML +E  S+      S
Subjt:  GDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGATGCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAAT
AATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAGTGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTG
AGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCAACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCT
TAG
mRNA sequenceShow/hide mRNA sequence
TTCTTAGAAATTCATAAGAAAATAGTTCATGAACATTGAGGAGAGACCGAGGAACTTGGTCCCCAAGGTGTGAGGAGACGATCATTTATAAGGCTGTTCCCGATTCACTC
TCTCCTTTTGCTTTGTTATTAGGGTTTTGACGCAATTTAGATTGTTTCGGAACTTTTGAATGGATTCAAATCATTTGGGGCCTGCTCAAGGTGGAGAATCCGGAGTCGAT
GCTGGGGATTGGAGGTCTCAATTGCAGCCGGATTCTCGGCATCAAATTGTCGACAGAATAATGGAGACATTGAAGAGGATCCTTCCTGTTTCTGGTCCTGAGGGATTGAG
TGAGCTGAGGAAAATTGCTGTAAGGTTCGAGGAAAAGATTTATACTGCCTCTACTAGTGAGCCAGAGTACCGAAGGAAAATACATGTGAAGATGCTTACTTTGGAACCCA
ACTCTGAGACGACCACTGCATTACCATCAATGCCTGTGCCTATGGCTTCCAATCAACCTTAG
Protein sequenceShow/hide protein sequence
MDSNHLGPAQGGESGVDAGDWRSQLQPDSRHQIVDRIMETLKRILPVSGPEGLSELRKIAVRFEEKIYTASTSEPEYRRKIHVKMLTLEPNSETTTALPSMPVPMASNQP