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Carg24018 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24018
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCOP9 signalosome complex subunit 8-like
Genome locationCarg_Chr11:10088699..10090468
RNA-Seq ExpressionCarg24018
SyntenyCarg24018
Gene Ontology termsGO:0000338 - protein deneddylation (biological process)
GO:0009416 - response to light stimulus (biological process)
GO:0009753 - response to jasmonic acid (biological process)
GO:0010387 - COP9 signalosome assembly (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008180 - COP9 signalosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR033205 - COP9 signalosome, subunit CSN8
IPR033464 - CSN8/PSMD8/EIF3K


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588823.1 COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. sororia]7.8e-45100Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

KAG7022587.1 COP9 signalosome complex subunit 8, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-67100Show/hide
Query:  RKDHSLNVVCLYVPLREKKIEYASTTKIEYGALAAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVY
        RKDHSLNVVCLYVPLREKKIEYASTTKIEYGALAAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVY
Subjt:  RKDHSLNVVCLYVPLREKKIEYASTTKIEYGALAAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVY

Query:  EAIDGFDWSQEVRGLLAAFSGKSL
        EAIDGFDWSQEVRGLLAAFSGKSL
Subjt:  EAIDGFDWSQEVRGLLAAFSGKSL

XP_022927899.1 COP9 signalosome complex subunit 8-like [Cucurbita moschata]7.8e-45100Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

XP_022989724.1 COP9 signalosome complex subunit 8-like [Cucurbita maxima]1.6e-4295.4Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGI+YQDEWPYTIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRD+GGVYEAIDGFDW QEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

XP_023531250.1 COP9 signalosome complex subunit 8-like [Cucurbita pepo subsp. pepo]3.3e-4396.55Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGI+YQDEWPYTIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDW QEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

TrEMBL top hitse value%identityAlignment
A0A0A0KJG9 CSN8_PSD8_EIF3K domain-containing protein5.6e-4186.81Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL
        AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWK+IPSTIKENRPELVA+WKIGQKLW+RDH GVYEAI   DW QEV+GLLAAFSGKSL
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFSGKSL

A0A1S3BMN0 COP9 signalosome complex subunit 8 isoform X19.0e-3988.51Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW RDH GVYEAI   DW QEV+GLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

A0A1S3BMY1 COP9 signalosome complex subunit 8 isoform X29.0e-3988.51Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGI+Y+DEWPY IHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLW RDH GVYEAI   DW QEV+GLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

A0A6J1EJA8 COP9 signalosome complex subunit 8-like3.8e-45100Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

A0A6J1JQ49 COP9 signalosome complex subunit 8-like7.9e-4395.4Show/hide
Query:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        AAAEGI+YQDEWPYTIHFLGY YVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRD+GGVYEAIDGFDW QEVRGLLAAFS
Subjt:  AAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

SwissProt top hitse value%identityAlignment
P43255 COP9 signalosome complex subunit 87.1e-3368.6Show/hide
Query:  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        A+EGI Y D+WPY IH LGYFYVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  D+ GVYEAI G+DWSQE + ++AAFS
Subjt:  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS

Q6GQA6 COP9 signalosome complex subunit 81.3e-1343.08Show/hide
Query:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA
        Y   +D+N+AR+LWK IPS IK +  EL  +W++GQK+W RD  G+Y +I  + WS+ ++ ++ A
Subjt:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA

Q6P4Z9 COP9 signalosome complex subunit 89.0e-1241.54Show/hide
Query:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA
        Y   +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ V+ ++ A
Subjt:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA

Q7ZUZ0 COP9 signalosome complex subunit 82.8e-1343.08Show/hide
Query:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA
        Y   +D+N+AR+LWK IP  IK   PE+ A+W +GQ++W RD  G+Y AI  + WS+ +  ++ A
Subjt:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA

Q8VBV7 COP9 signalosome complex subunit 89.0e-1241.54Show/hide
Query:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA
        Y   +D+N+AR+LWK IP  IK    EL  +W +GQ++W RD  G+Y  I+   WS+ V+ ++ A
Subjt:  YFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAA

Arabidopsis top hitse value%identityAlignment
AT4G14110.1 COP9 signalosome, subunit CSN85.0e-3468.6Show/hide
Query:  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS
        A+EGI Y D+WPY IH LGYFYVDD +SARFLWK IP+ IKE +PE+VA W IGQKLW  D+ GVYEAI G+DWSQE + ++AAFS
Subjt:  AAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQEVRGLLAAFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGTAAAGATCACAGCTTGAACGTTGTTTGCCTATACGTCCCTTTACGAGAGAAGAAGATTGAATATGCTTCAACTACAAAGATTGAATACGGGGCATTGGCTGCAGCTGA
GGGCATTTCTTATCAGGATGAATGGCCTTACACAATCCATTTTCTTGGCTACTTTTACGTTGATGATATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTA
TAAAAGAGAACCGACCAGAACTGGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGATTCGGGACCATGGGGGTGTTTATGAGGCTATTGATGGATTTGATTGGTCTCAA
GAGGTTCGAGGCCTATTAGCAGCATTTTCAGGCAAGTCGCTATAA
mRNA sequenceShow/hide mRNA sequence
CGTAAAGATCACAGCTTGAACGTTGTTTGCCTATACGTCCCTTTACGAGAGAAGAAGATTGAATATGCTTCAACTACAAAGATTGAATACGGGGCATTGGCTGCAGCTGA
GGGCATTTCTTATCAGGATGAATGGCCTTACACAATCCATTTTCTTGGCTACTTTTACGTTGATGATATCAATAGTGCTCGATTTCTCTGGAAAGCAATACCTTCCACTA
TAAAAGAGAACCGACCAGAACTGGTTGCAGTTTGGAAAATTGGCCAAAAGCTATGGATTCGGGACCATGGGGGTGTTTATGAGGCTATTGATGGATTTGATTGGTCTCAA
GAGGTTCGAGGCCTATTAGCAGCATTTTCAGGCAAGTCGCTATAA
Protein sequenceShow/hide protein sequence
RKDHSLNVVCLYVPLREKKIEYASTTKIEYGALAAAEGISYQDEWPYTIHFLGYFYVDDINSARFLWKAIPSTIKENRPELVAVWKIGQKLWIRDHGGVYEAIDGFDWSQ
EVRGLLAAFSGKSL