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Carg24084 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24084
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionHistone H2A
Genome locationCarg_Chr16:5466074..5466711
RNA-Seq ExpressionCarg24084
SyntenyCarg24084
Gene Ontology termsGO:0031507 - heterochromatin assembly (biological process)
GO:0000786 - nucleosome (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR002119 - Histone H2A
IPR007125 - Histone H2A/H2B/H3
IPR009072 - Histone-fold
IPR032454 - Histone H2A, C-terminal domain
IPR032458 - Histone H2A conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1215310.1 putative histone H2A.1 [Morella rubra]1.3e-6197.01Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKK GSSKASGG+D+S
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

XP_018852324.1 histone H2A.6 [Juglans regia]9.9e-6297.01Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKA SRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKKAG+SKASGG+D+S
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

XP_022142823.1 probable histone H2A.1 [Momordica charantia]3.4e-6298.5Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE
        DVTIANGGVMPNIHNLLLPKK GSSKASGG+DE
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE

XP_022929379.1 histone H2A.6 [Cucurbita moschata]1.8e-63100Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

XP_039026996.1 histone H2A.6 [Hibiscus syriacus]5.8e-6297.74Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE
        DVTIANGGVMPNIHNLLLPKKAG+SKASGG+D+
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE

TrEMBL top hitse value%identityAlignment
A0A2N9FT44 Histone H2A9.6e-6397.76Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGA+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKKAGSSKASGG+D+S
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

A0A6A2XWP3 Histone H2A2.8e-6297.74Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE
        DVTIANGGVMPNIHNLLLPKKAG+SKASGG+D+
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE

A0A6J1CP89 Histone H2A1.6e-6298.5Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE
        DVTIANGGVMPNIHNLLLPKK GSSKASGG+DE
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDE

A0A6J1ENK4 Histone H2A8.7e-64100Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

A0A6J1J4G3 Histone H2A8.7e-64100Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
        DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGEDES

SwissProt top hitse value%identityAlignment
A2YVE5 Probable histone H2A.32.8e-5991.79Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK +GS A+KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELS+LLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSS-KASGGEDE
         VTIANGGVMPNIHNLLLPKKAGSS KA+  +DE
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSS-KASGGEDE

O81826 Probable histone H2A.31.5e-6097.62Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSK
        DVTIANGGVMPNIHNLLLPKKAGSSK
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSK

Q9C681 Probable histone H2A.12.5e-6092.42Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED
        DVTIANGGVMPNIHNLLLPKK G+SK S  +D
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED

Q9LD28 Histone H2A.68.7e-6197.62Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSK
        DVTIANGGVMPNIHNLLLPKKAG+SK
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSK

Q9LHQ5 Probable histone H2A.29.6e-6092.42Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED
        DVTIANGGVMPNIH+LLLPKKAG+SK S  ED
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED

Arabidopsis top hitse value%identityAlignment
AT1G51060.1 histone H2A 101.8e-6192.42Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG++KKAT+RSSKAGLQFPVGRIARFLK GKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED
        DVTIANGGVMPNIHNLLLPKK G+SK S  +D
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED

AT3G20670.1 histone H2A 136.8e-6192.42Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG +KK+TSRSSKAGLQFPVGRIARFLK GKYA RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED
        DVTIANGGVMPNIH+LLLPKKAG+SK S  ED
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSKASGGED

AT4G27230.1 histone H2A 21.1e-6197.62Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSK
        DVTIANGGVMPNIHNLLLPKKAGSSK
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSK

AT4G27230.2 histone H2A 21.1e-6197.62Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGK LGSGA+KK+TSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSK
        DVTIANGGVMPNIHNLLLPKKAGSSK
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSK

AT5G54640.1 Histone superfamily protein6.2e-6297.62Show/hide
Query:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
        MAGRGKTLGSG +KKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG
Subjt:  MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLG

Query:  DVTIANGGVMPNIHNLLLPKKAGSSK
        DVTIANGGVMPNIHNLLLPKKAG+SK
Subjt:  DVTIANGGVMPNIHNLLLPKKAGSSK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAAGAGGCAAAACTTTGGGATCTGGAGCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCCGTCGGTCGTATTGCTCGTTTCTTGAA
AGCCGGTAAATACGCTGAACGAGTCGGTGCTGGAGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCCGCAAGGG
ACAACAAGAAGACTAGAATTGTGCCTCGCCATATCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATG
CCTAACATTCACAATCTGCTATTGCCGAAGAAGGCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAA
mRNA sequenceShow/hide mRNA sequence
GTCATCCTTTATTTTTCGTTCAAAATATTCCTGAGTTTGAACTTCATCTCTTTCTGTATCCAAATTTCGACAAATCAATGGCGGGAAGAGGCAAAACTTTGGGATCTGGA
GCGTCGAAGAAGGCCACTTCAAGGAGTAGCAAGGCCGGCCTTCAATTTCCCGTCGGTCGTATTGCTCGTTTCTTGAAAGCCGGTAAATACGCTGAACGAGTCGGTGCTGG
AGCTCCGGTTTACCTCGCCGCCGTCCTCGAATATCTTGCAGCGGAGGTTCTGGAATTGGCTGGAAATGCCGCAAGGGACAACAAGAAGACTAGAATTGTGCCTCGCCATA
TCCAGCTTGCTGTGAGGAACGACGAAGAGCTGAGCAAGCTTCTTGGAGACGTAACGATTGCGAATGGCGGTGTTATGCCTAACATTCACAATCTGCTATTGCCGAAGAAG
GCTGGTAGTTCCAAGGCGTCTGGTGGTGAGGATGAATCCTAAATTAAATGAAGAAACGTGGTCGAGGTGTTCAGATCTGGAATTTAGGTTTTGTTAGCTTTATGTGCTTT
Protein sequenceShow/hide protein sequence
MAGRGKTLGSGASKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVM
PNIHNLLLPKKAGSSKASGGEDES