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Carg24090 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24090
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S28
Genome locationCarg_Chr03:1914206..1915682
RNA-Seq ExpressionCarg24090
SyntenyCarg24090
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0006869 - lipid transport (biological process)
GO:0055085 - transmembrane transport (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0005319 - lipid transporter activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8008043.1 hypothetical protein FH972_004591 [Carpinus fangiana]7.2e-2587.32Show/hide
Query:  IFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +F L +L  MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  IFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]2.6e-3085.87Show/hide
Query:  IINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        I NV+PS +  S  AAQ+ SSI F LLLSGMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  IINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG6603304.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]3.2e-2598.44Show/hide
Query:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +GMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]2.5e-2574.74Show/hide
Query:  IINVSPSQVQPSPAAAQSFSSIFFLLLLS---GMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        I NV+PS +  S      F  +  L L     GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  IINVSPSQVQPSPAAAQSFSSIFFLLLLS---GMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

KAG7033582.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-64100Show/hide
Query:  MEFSYPQWPIPAHLPAHTAQSTLFNKKKEKKKSESERRIIINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFL
        MEFSYPQWPIPAHLPAHTAQSTLFNKKKEKKKSESERRIIINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFL
Subjt:  MEFSYPQWPIPAHLPAHTAQSTLFNKKKEKKKSESERRIIINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFL

Query:  DDQNRYIMRNVKGPVREGDILTLLESEREAR
        DDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  DDQNRYIMRNVKGPVREGDILTLLESEREAR

TrEMBL top hitse value%identityAlignment
A0A0S3SUH5 Uncharacterized protein (Fragment)7.8e-2584.81Show/hide
Query:  AAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        AAA   SS FFL +   MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  AAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A5N6QPB7 Uncharacterized protein3.5e-2587.32Show/hide
Query:  IFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +F L +L  MESQ+KHA+VVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDILTLLESEREAR
Subjt:  IFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1E226 40S ribosomal protein S28-1-like isoform X23.5e-2596.88Show/hide
Query:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X13.5e-2596.88Show/hide
Query:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        +GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  SGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

A0A6J1EKH1 40S ribosomal protein S28-1-like1.0e-24100Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-23.5e-2287.1Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

P46302 40S ribosomal protein S285.4e-2388.71Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M++Q+K A+VVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q6PBK3 40S ribosomal protein S282.3e-1879.31Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q90YP3 40S ribosomal protein S282.3e-1879.31Show/hide
Query:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREAR
Subjt:  IKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Q9SR73 40S ribosomal protein S28-19.2e-2390.32Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein6.5e-2490.32Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein6.5e-2490.32Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR

AT5G64140.1 ribosomal protein S282.5e-2387.1Show/hide
Query:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR
        M+SQIKHA+VVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREAR
Subjt:  MESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTCTCGTATCCTCAGTGGCCCATTCCAGCCCATTTACCGGCCCACACGGCCCAATCTACTTTATTTAACAAGAAAAAGGAAAAAAAAAAAAGTGAAAGTGAAAG
AAGGATTATTATAAACGTAAGCCCTAGCCAAGTTCAACCCTCTCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGA
TCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAAT
GTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGG
mRNA sequenceShow/hide mRNA sequence
ATGGAATTCTCGTATCCTCAGTGGCCCATTCCAGCCCATTTACCGGCCCACACGGCCCAATCTACTTTATTTAACAAGAAAAAGGAAAAAAAAAAAAGTGAAAGTGAAAG
AAGGATTATTATAAACGTAAGCCCTAGCCAAGTTCAACCCTCTCCCGCTGCCGCTCAATCTTTTTCGTCGATCTTCTTCCTTCTCTTGCTCTCAGGAATGGAATCACAGA
TCAAACATGCTCTGGTGGTGAAAGTAATGGGTAGAACTGGATCAAGAGGGCAGGTGACTCAAGTGAGAGTCAAGTTTCTTGATGATCAGAATCGTTACATTATGAGGAAT
GTCAAGGGACCAGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCCGAGAGGGAAGCTAGG
Protein sequenceShow/hide protein sequence
MEFSYPQWPIPAHLPAHTAQSTLFNKKKEKKKSESERRIIINVSPSQVQPSPAAAQSFSSIFFLLLLSGMESQIKHALVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRN
VKGPVREGDILTLLESEREAR