CuGenDBv2

Gene ID	Carg24131
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	succinate dehydrogenase assembly factor 1, mitochondrial-like
Genome location	Carg_Chr09:11586626..11587283
RNA-Seq Expression	Carg24131
Synteny	Carg24131
Gene Ontology terms	GO:0009853 - photorespiration (biological process) GO:0015977 - carbon fixation (biological process) GO:0015979 - photosynthesis (biological process) GO:0034553 - mitochondrial respiratory chain complex II assembly (biological process) GO:0005739 - mitochondrion (cellular component) GO:0009536 - plastid (cellular component)
InterPro domains	IPR008011 - Complex 1 LYR protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6592356.1 hypothetical protein SDJN03_14702, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-22

87.67

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVE
        LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRA + F +QF   V+
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVE

KAG7025171.1 SDH6-3, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-29

100

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Query:  MLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        MLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
Subjt:  MLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

XP_022925400.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita moschata]

4.9e-26

91.89

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        LSGLQKQVLSLYR+FLRAARSKS EDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR TINF +Q KSVVES
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

XP_022973474.1 succinate dehydrogenase assembly factor 1, mitochondrial-like [Cucurbita maxima]

1.4e-28

97.3

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        LSGLQKQVLSLYRAFLRAARSKS EDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

XP_038890134.1 succinate dehydrogenase assembly factor 1, mitochondrial [Benincasa hispida]

6.8e-20

84.29

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSGLQKQVLSLYRAFLRAARSKS EDRRQ+ES+VAAEFRRNAKQIDRKNFIHIEYLLRR      +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KST3 Uncharacterized protein

3.7e-19

81.43

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSGLQKQVLSLYRAFLRAAR+KSVEDR+QMES+VA EFRRNAKQIDRKNFI+IEYLLRR      +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

A0A1S3CAJ2 succinate dehydrogenase assembly factor 1, mitochondrial

1.3e-19

82.86

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSGLQKQVLSLYRAFLRAAR+KSVEDR+QMES+VAAEFRRNAKQIDRKNFI+IEYLLRR      +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

A0A6J1CJC1 succinate dehydrogenase assembly factor 1, mitochondrial

9.0e-18

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSGLQKQVLSLYR FLRAARSKS EDRRQMES+VAAEFRRNA QID KNFI+IEYLLRR      +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

A0A6J1EHV2 succinate dehydrogenase assembly factor 1, mitochondrial-like

2.4e-26

91.89

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        LSGLQKQVLSLYR+FLRAARSKS EDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRR TINF +Q KSVVES
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

A0A6J1IEP3 succinate dehydrogenase assembly factor 1, mitochondrial-like

6.7e-29

97.3

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
        LSGLQKQVLSLYRAFLRAARSKS EDRRQMES+VAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G39725.1 LYR family of Fe/S cluster biogenesis protein

2.6e-17

62.86

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSG+QKQVLSLYR FLRAARS+ +EDR+++E +V+ EFR N+K++DRKNF +IEYLLR  T    +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

AT2G39725.2 LYR family of Fe/S cluster biogenesis protein

2.6e-17

62.86

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Query:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS
        LSG+QKQVLSLYR FLRAARS+ +EDR+++E +V+ EFR N+K++DRKNF +IEYLLR  T    +Q KS
Subjt:  LSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKS

Sequences

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CDS sequence

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mRNA sequence

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ATGCTCTCAGGGTTGCAAAAGCAAGTGCTCAGTCTATACAGAGCATTTCTTCGAGCAGCTCGTTCCAAATCCGTCGAAGATCGACGGCAAATGGAATCGGTTGTCGCCGC
TGAGTTCCGCCGAAACGCCAAGCAAATCGATCGCAAAAATTTCATCCACATCGAGTACCTTCTTCGTCGAGCGACGATCAATTTTGCAGAACAGTTCAAGTCGGTGGTAG
AATCTTGAATGCTTAAAAATGTGGACAATGGATTTTTCTTCCTTTGTGAGGTTAAGGTATGAACTTACACTAAATTCTACATTTAACTATCATTATATATATTCTAGATT
AGAAGATACTTTTGATCTTTGTAATTTAGAATTTTTTTTTGATATATTCATT

Protein sequence

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MLSGLQKQVLSLYRAFLRAARSKSVEDRRQMESVVAAEFRRNAKQIDRKNFIHIEYLLRRATINFAEQFKSVVES

Carg24131 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome