; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24172 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24172
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein transport protein Sec61 subunit beta
Genome locationCarg_Chr06:6258524..6258772
RNA-Seq ExpressionCarg24172
SyntenyCarg24172
Gene Ontology termsGO:0006616 - SRP-dependent cotranslational protein targeting to membrane, translocation (biological process)
GO:0031204 - posttranslational protein targeting to membrane, translocation (biological process)
GO:0005784 - Sec61 translocon complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR016482 - Protein transport protein SecG/Sec61-beta/Sbh
IPR030671 - Protein transport Sec61-beta/Sbh


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB1225231.1 Protein transport protein Sec61 subunit beta [Morella rubra]1.5e-3196.34Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_011650635.1 protein transport protein Sec61 subunit beta [Cucumis sativus]1.3e-3297.56Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022146520.1 protein transport protein Sec61 subunit beta-like [Momordica charantia]1.7e-3298.78Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_022950482.1 protein transport protein Sec61 subunit beta-like [Cucurbita moschata]3.5e-33100Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

XP_038875187.1 protein transport protein Sec61 subunit beta-like isoform X1 [Benincasa hispida]1.7e-3298.78Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

TrEMBL top hitse value%identityAlignment
A0A0A0L6Y8 Protein transport protein Sec61 subunit beta6.4e-3397.56Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGG PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVA+LHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1EFZ9 Protein transport protein Sec61 subunit beta8.3e-3398.78Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1GEY3 Protein transport protein Sec61 subunit beta1.7e-33100Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1IH25 Protein transport protein Sec61 subunit beta1.7e-33100Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

A0A6J1J088 Protein transport protein Sec61 subunit beta8.3e-3398.78Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
        MALGG APQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

SwissProt top hitse value%identityAlignment
A8I6P9 Protein transport protein Sec61 subunit beta1.4e-0848.68Show/hide
Query:  MALGGGAPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        +A GG +       A  ++RRR    SG SG   A    + FYTDD PG K+SP VV+ MS+ FIAFV ILHV+GK
Subjt:  MALGGGAPQRGSAAATASMRRRRTTSSGTSG--GAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P38389 Protein transport protein Sec61 subunit beta2.3e-2782.72Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

P60467 Protein transport protein Sec61 subunit beta6.4e-0643.59Show/hide
Query:  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

P60468 Protein transport protein Sec61 subunit beta6.4e-0643.59Show/hide
Query:  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK
        G +P +  A  AA +++R+R+  S G      T+    G M +FYT+D+PGLK+ P  VLVMS+ FIA V +LH+ GK
Subjt:  GGAPQRGSA--AATASMRRRRTTSSG------TSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGK

Q9HFC7 Protein transport protein Sec61 subunit beta9.9e-0749.18Show/hide
Query:  ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL
        A AS R   T S G +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V  LH++ K+
Subjt:  ATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKL

Arabidopsis top hitse value%identityAlignment
AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein1.6e-2882.72Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.2 Preprotein translocase Sec, Sec61-beta subunit protein1.6e-2882.72Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.3 Preprotein translocase Sec, Sec61-beta subunit protein1.6e-2882.72Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT2G45070.4 Preprotein translocase Sec, Sec61-beta subunit protein1.6e-2882.72Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +G GAPQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTTS----SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR

AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein4.7e-2883.33Show/hide
Query:  LGGGAPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR
        +GGGAPQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIGFIAFVA+LHVMGKLYFV+
Subjt:  LGGGAPQRGSAAATASMRRRRTT-SSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACTAGGTGGAGGAGCTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGGACGACAAGTTCAGGTACATCTGGAGGGGCAGCTGGAACAAT
GCTGCAATTTTACACGGATGATGCTCCTGGCCTCAAGATCTCCCCCAACGTTGTACTCGTCATGAGCATTGGTTTCATTGCGTTTGTTGCCATTCTCCATGTTATGGGAA
AGCTGTACTTCGTGCGAAGAGAAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCACTAGGTGGAGGAGCTCCCCAGAGAGGAAGTGCGGCAGCTACTGCCAGCATGCGCAGGAGAAGGACGACAAGTTCAGGTACATCTGGAGGGGCAGCTGGAACAAT
GCTGCAATTTTACACGGATGATGCTCCTGGCCTCAAGATCTCCCCCAACGTTGTACTCGTCATGAGCATTGGTTTCATTGCGTTTGTTGCCATTCTCCATGTTATGGGAA
AGCTGTACTTCGTGCGAAGAGAAGCCTAG
Protein sequenceShow/hide protein sequence
MALGGGAPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA