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Carg24176 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24176
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransmembrane protein
Genome locationCarg_Chr06:6236702..6237924
RNA-Seq ExpressionCarg24176
SyntenyCarg24176
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN51411.1 hypothetical protein Csa_007923 [Cucumis sativus]2.1e-2581.93Show/hide
Query:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKD
        MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GVVVGYSLKR VNRW+SKLLRRLKD
Subjt:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKD

XP_022956291.1 uncharacterized protein LOC111458016 [Cucurbita moschata]6.4e-3598.8Show/hide
Query:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLK+D
Subjt:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

XP_022974252.1 uncharacterized protein LOC111472885 [Cucurbita maxima]1.6e-3396.39Show/hide
Query:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKSAALPSSVEALR+GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV+VGYSLKR VNRWVSKLLRRLKDD
Subjt:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

XP_023540347.1 uncharacterized protein LOC111800746 [Cucurbita pepo subsp. pepo]2.2e-35100Show/hide
Query:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
Subjt:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

XP_038893067.1 uncharacterized protein LOC120081950 [Benincasa hispida]1.5e-2888.1Show/hide
Query:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKS    SSVE LRN GEGIASALSSSDQSRLLLATRPPRQVVSI TCSKLC +CFVAGVVVGYSLKR VNRWVSKLLRRLKDD
Subjt:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

TrEMBL top hitse value%identityAlignment
A0A0A0KUK2 Uncharacterized protein1.0e-2581.93Show/hide
Query:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKD
        MKS    SSVEALRN GEGIAS+LSS D SR LLATRPPRQVVSI TCSKLC +CFV GVVVGYSLKR VNRW+SKLLRRLKD
Subjt:  MKSAALPSSVEALRN-GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKD

A0A314Z6R0 Uncharacterized protein6.9e-1964.2Show/hide
Query:  SAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        S++  SS ++ R GEG+A+ALSSSDQSR+L   RP R VVS+ TCSKLC +CFVAG+VVGY+LKRRV RW S+LL+R+KD+
Subjt:  SAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

A0A6J1GW53 uncharacterized protein LOC1114580163.1e-3598.8Show/hide
Query:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLK+D
Subjt:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

A0A6J1I9S5 uncharacterized protein LOC1114728857.6e-3496.39Show/hide
Query:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        MKSAALPSSVEALR+GEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGV+VGYSLKR VNRWVSKLLRRLKDD
Subjt:  MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

W9RT53 Uncharacterized protein5.3e-1968.67Show/hide
Query:  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        KSA+  SS  +  R  EGI++ALSS DQSRLL+ +RPPR VVS+ TCSKLC ICFV GVVVGY+LKRRV RW S+LL+RLKDD
Subjt:  KSAALPSSV-EALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19240.1 unknown protein3.0e-1472.55Show/hide
Query:  LATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD
        L TRPP   VS+ TCSKLC + FVAGV VGY+LKRRV RW SKLLRR+KDD
Subjt:  LATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGCTTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACC
TCCCAGGCAAGTAGTATCGATATTAACTTGTTCAAAGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTT
CCAAGCTATTGAGGAGATTAAAAGATGATTGA
mRNA sequenceShow/hide mRNA sequence
TCAAACGGCTCCTAAACCCTACTTTGTATTTCTCTCTCTCTTTTTCAAGTCCGACGGCGATTGTTGACGGCAGAAATGAAATCGGCGGCGTTACCTTCTTCAGTGGAAGC
TTTGAGAAATGGAGAAGGAATCGCCTCCGCCCTATCTTCTTCCGATCAGTCTCGTCTATTGCTTGCCACTAGACCTCCCAGGCAAGTAGTATCGATATTAACTTGTTCAA
AGCTATGTGGTATTTGCTTTGTTGCCGGGGTGGTGGTTGGTTACTCGTTAAAGCGACGCGTGAATCGATGGGTTTCCAAGCTATTGAGGAGATTAAAAGATGATTGATAA
GTCCATCCCTTTGTTCTGGTATGCCACTTTCATTGATTATAATTTATAGAATTGAATTACTGATTTGTTGCCCAATTTAGAGCAGGAAGATGAACATTCCTAGCTCATTA
CCGGCTCATTATTGGACAATTACTTGTTCACAAGCATGGAGTTAATGATTTGAATTTTCCATCTAATGAAAAATCATTTTTGCTCCACTTCTTCTTCTGATCCTTTGGAG
AGGTATTTTAGTGATAAGTTCTATAAGAGCTCATCGATCCCATTTGGTCAAATGCCTAGGGATAAACGTATTTCTGATTTGGTGGCGAGAATTTCTTTGATAAAAA
Protein sequenceShow/hide protein sequence
MKSAALPSSVEALRNGEGIASALSSSDQSRLLLATRPPRQVVSILTCSKLCGICFVAGVVVGYSLKRRVNRWVSKLLRRLKDD