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Carg24181 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24181
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationCarg_Chr06:6197676..6198585
RNA-Seq ExpressionCarg24181
SyntenyCarg24181
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBN69274.1 TatD related DNase [Prunus dulcis]4.6e-1936.36Show/hide
Query:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL
        K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+  +     +D  +  PI+  + D+LE PF   E+ K   D 
Subjt:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL

Query:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD
        G +K+PGPDG +  F +  W  ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Subjt:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD

CAN79190.1 hypothetical protein VITISV_000232 [Vitis vinifera]4.6e-1934.62Show/hide
Query:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN
        KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G    ++  D SPI++E    LE+PFTE EI K    +  +
Subjt:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN

Query:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK
        K PGPDG T    +  W+ I+ED++ VFD+  R+ IIN   + ++I L+PK++++K
Subjt:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK

KAG7028494.1 LINE-1 retrotransposable element ORF2 protein, partial [Cucurbita argyrosperma subsp. argyrosperma]1.7e-127100Show/hide
Query:  MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYK
        MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYK
Subjt:  MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYK

Query:  VFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPICYFSLFLVPAEVTMIIEKLY
        VFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPICYFSLFLVPAEVTMIIEKLY
Subjt:  VFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPICYFSLFLVPAEVTMIIEKLY

Query:  MNFLWKGGQNRKGSHLLRWSIYPSTY
        MNFLWKGGQNRKGSHLLRWSIYPSTY
Subjt:  MNFLWKGGQNRKGSHLLRWSIYPSTY

RVW78846.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]5.4e-2035.44Show/hide
Query:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN
        KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G    ++  D SPI+ E    LE+PFTE EIYK    +  +
Subjt:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN

Query:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI
        K PGPDG T    +  W+ I+ED++ VFD+  R+ IIN   + ++I L+PK++++K I
Subjt:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI

VVA31869.1 Hypothetical predicted protein, partial [Prunus dulcis]1.6e-1936.36Show/hide
Query:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL
        K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+  +     +D  +  PI+  + D+LE PF   E+ K   D 
Subjt:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL

Query:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD
        G +K+PGPDG +  F +  W  ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Subjt:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD

TrEMBL top hitse value%identityAlignment
A0A438H2J5 Transposon TX1 uncharacterized 149 kDa protein2.6e-2035.44Show/hide
Query:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN
        KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G    ++  D SPI+ E    LE+PFTE EIYK    +  +
Subjt:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN

Query:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI
        K PGPDG T    +  W+ I+ED++ VFD+  R+ IIN   + ++I L+PK++++K I
Subjt:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLI

A0A438I435 Transposon TX1 uncharacterized 149 kDa protein2.9e-1936.05Show/hide
Query:  KSKWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLG
        K KW+ EGD N+ F H V         ++ L       L N   I  E++ ++ KL+T   G    ++  D SPI+ E    LE+PFTE EI K    L 
Subjt:  KSKWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLG

Query:  SNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTN
         +K PGPDG T    ++ W+ I+ED++ VF +  R+ IIN   + ++I LIPK+++SK I     H S +T+
Subjt:  SNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTN

A0A5E4FWN6 Reverse transcriptase domain-containing protein (Fragment)7.6e-2036.36Show/hide
Query:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL
        K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+  +     +D  +  PI+  + D+LE PF   E+ K   D 
Subjt:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL

Query:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD
        G +K+PGPDG +  F +  W  ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Subjt:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD

A0A5H2XQW2 TatD related DNase2.2e-1936.36Show/hide
Query:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL
        K KW  EGD NT F H V   + +        VE L    V  N IERE+I F++ LF+  +     +D  +  PI+  + D+LE PF   E+ K   D 
Subjt:  KSKWLPEGDANTAFSHLVVQLIDEGTI-----VEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDL

Query:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD
        G +K+PGPDG +  F +  W  ++ D++ V  D F++ I+N + ++T+ICLIPK+  +  +KV D
Subjt:  GSNKTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGD

A5BQD9 Reverse transcriptase domain-containing protein2.2e-1934.62Show/hide
Query:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN
        KW+ EGD N+ F H V         +++L       L N + I+ E++ ++ KL+    G    ++  D SPI++E    LE+PFTE EI K    +  +
Subjt:  KWLPEGDANTAFSHLVVQLIDEGTIVEILSAN----LVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSN

Query:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK
        K PGPDG T    +  W+ I+ED++ VFD+  R+ IIN   + ++I L+PK++++K
Subjt:  KTPGPDGSTNEFLRKSWN-IQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISK

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein8.7e-0529.2Show/hide
Query:  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFL-RKSWNIQEDIIGVFDDIFRNTIIN
        I+  +  +Y+ L+  K    +   T LD   +  +  E+ + L  P T  EI  +   L + K+PGPDG T EF  R    +   ++ +F  I +  I+ 
Subjt:  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFL-RKSWNIQEDIIGVFDDIFRNTIIN

Query:  AIFSKTYICLIPK
          F +  I LIPK
Subjt:  AIFSKTYICLIPK

P11369 LINE-1 retrotransposable element ORF2 protein2.1e-0630.77Show/hide
Query:  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIF-----RN
        I+  +  FY++L++ K    D     LD   +  +  +Q D L +P +  EI  V   L + K+PGPDG + EF +     +ED+I +   +F       
Subjt:  IERELIGFYRKLFTKK----DGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKTPGPDGSTNEFLRKSWNIQEDIIGVFDDIF-----RN

Query:  TIINAIFSKTYICLIPK
        T+ N+ +  T I LIPK
Subjt:  TIINAIFSKTYICLIPK

Arabidopsis top hitse value%identityAlignment
AT1G43760.1 DNAse I-like superfamily protein1.6e-0928.85Show/hide
Query:  KWLPEGDANTAFSHLVVQLIDEGTIVEIL----SANLVNGNGIERELIGFYRKLFTKKDGRRT---VLDNRDISPITAEQ--RDFLETPFTEVEIYKVFI
        KWL +GDANT F H V+       +++ L       + N   ++  ++ +Y  L        T   V   +DI P          L    ++ EI     
Subjt:  KWLPEGDANTAFSHLVVQLIDEGTIVEIL----SANLVNGNGIERELIGFYRKLFTKKDGRRT---VLDNRDISPITAEQ--RDFLETPFTEVEIYKVFI

Query:  DLGSNKTPGPDGSTNEFLRKSWNIQED-IIGVFDDIFRNTIINAIFSKTYICLIPK
         +  NK PGPD  T EF  +SW + +D  I    + FR   +   F+ T I LIPK
Subjt:  DLGSNKTPGPDGSTNEFLRKSWNIQED-IIGVFDDIFRNTIINAIFSKTYICLIPK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGCTATGTGGCGCCAAAGATGTAAAATCTAAGTGGTTACCAGAGGGTGATGCCAACACTGCTTTTTCCCACCTTGTTGTACAGCTAATAGATGAAGGAACCAT
TGTGGAAATTCTTTCAGCTAATCTAGTGAATGGCAATGGGATAGAGAGGGAGCTCATAGGCTTTTATAGAAAGCTTTTCACCAAAAAGGATGGTAGGAGAACAGTGCTCG
ATAATAGGGATATAAGCCCTATTACAGCCGAACAGAGAGACTTCTTAGAGACTCCTTTCACAGAAGTGGAAATTTACAAAGTATTTATAGATTTGGGATCTAATAAGACA
CCTGGGCCTGATGGATCTACCAATGAATTCCTTAGAAAATCATGGAACATCCAGGAAGACATAATAGGAGTGTTCGATGATATTTTTAGGAATACGATCATTAATGCTAT
CTTTAGCAAAACATATATTTGTCTCATCCCAAAAAGGAACATCAGTAAACTAATAAAGGTGGGAGACACTCATACAAGCTACCTCACTAATTTTCCCATATGTTACTTCT
CATTATTTCTTGTTCCTGCTGAAGTCACAATGATTATTGAGAAGTTGTACATGAATTTTCTTTGGAAGGGAGGCCAAAATAGAAAGGGCAGCCACCTTCTTAGATGGTCT
ATCTATCCAAGCACCTATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGCTATGTGGCGCCAAAGATGTAAAATCTAAGTGGTTACCAGAGGGTGATGCCAACACTGCTTTTTCCCACCTTGTTGTACAGCTAATAGATGAAGGAACCAT
TGTGGAAATTCTTTCAGCTAATCTAGTGAATGGCAATGGGATAGAGAGGGAGCTCATAGGCTTTTATAGAAAGCTTTTCACCAAAAAGGATGGTAGGAGAACAGTGCTCG
ATAATAGGGATATAAGCCCTATTACAGCCGAACAGAGAGACTTCTTAGAGACTCCTTTCACAGAAGTGGAAATTTACAAAGTATTTATAGATTTGGGATCTAATAAGACA
CCTGGGCCTGATGGATCTACCAATGAATTCCTTAGAAAATCATGGAACATCCAGGAAGACATAATAGGAGTGTTCGATGATATTTTTAGGAATACGATCATTAATGCTAT
CTTTAGCAAAACATATATTTGTCTCATCCCAAAAAGGAACATCAGTAAACTAATAAAGGTGGGAGACACTCATACAAGCTACCTCACTAATTTTCCCATATGTTACTTCT
CATTATTTCTTGTTCCTGCTGAAGTCACAATGATTATTGAGAAGTTGTACATGAATTTTCTTTGGAAGGGAGGCCAAAATAGAAAGGGCAGCCACCTTCTTAGATGGTCT
ATCTATCCAAGCACCTATTGA
Protein sequenceShow/hide protein sequence
MKQLCGAKDVKSKWLPEGDANTAFSHLVVQLIDEGTIVEILSANLVNGNGIERELIGFYRKLFTKKDGRRTVLDNRDISPITAEQRDFLETPFTEVEIYKVFIDLGSNKT
PGPDGSTNEFLRKSWNIQEDIIGVFDDIFRNTIINAIFSKTYICLIPKRNISKLIKVGDTHTSYLTNFPICYFSLFLVPAEVTMIIEKLYMNFLWKGGQNRKGSHLLRWS
IYPSTY