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Carg24183 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24183
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCarg_Chr06:6171408..6173394
RNA-Seq ExpressionCarg24183
SyntenyCarg24183
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044260 - cellular macromolecule metabolic process (biological process)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34016.1 ty3-gypsy retrotransposon protein [Cucumis melo subsp. melo]2.3e-2445.86Show/hide
Query:  KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVN
        K++GKV +++V+V+IDCG THNFIS RLV+E ++  TETT Y +         GKG+   V+V LP LT+ EDFLPL+L  +        L  +  M V+
Subjt:  KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVN

Query:  WTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE
        W NL M   VR  KV +R D SLT++ + LKML K W   D+GFL  LQ  D S +E
Subjt:  WTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE

KAA0062882.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]4.6e-2538.75Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V
        MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI ++V + L    ++E+FLPL+L G+    G++    +G   V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W NLT+       +++I+ DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

KAG7028493.1 hypothetical protein SDJN02_09674, partial [Cucurbita argyrosperma subsp. argyrosperma]8.7e-101100Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPELTIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKV
        MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPELTIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKV
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPELTIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKV

Query:  TIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAKIYPVD
        TIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAKIYPVD
Subjt:  TIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAKIYPVD

TYK22515.1 transposon Tf2-1 polyprotein isoform X1 [Cucumis melo var. makuwa]4.6e-2538.75Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V
        MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI ++V + L    ++E+FLPL+L G+    G++    +G   V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W NLT+       +++I+ DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

XP_022154744.1 uncharacterized protein LOC111021922 [Momordica charantia]6.8e-2944.38Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGV
        MK+RG + +K+V++LIDCG THNFIS +LVD   LP  ET+NY +         GKGI + ++++LPELTI+E+FLPL+L  +        L T+  M V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGV

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W  LTM+ +  +N++ ++ DP+L ++EV LK LA+ W   DQGFL EL+  S + +GQ+
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

TrEMBL top hitse value%identityAlignment
A0A5A7V3R8 Eukaryotic translation initiation factor 3 30 kDa subunit2.2e-2538.75Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V
        MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI ++V + L    ++E+FLPL+L G+    G++    +G   V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W NLT+       +++I+ DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

A0A5D3D5G0 Ty3/gypsy retrotransposon protein2.5e-2441.94Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMGV---
        MKVRG + +K+V++LIDCG THNF+S +LV   +LP  ET +Y +         GKGI + V V + + T++EDFLPL+L G+    G++    +GV   
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMGV---

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSME
        +W NLT+       K+ I+ DPSLTK  V LK L K W + D G+L E + + +E
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSME

A0A5D3DG34 Eukaryotic translation initiation factor 3 30 kDa subunit2.2e-2538.75Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V
        MKV+GK+  K+V++LIDCG THNFIS +LV+  +LP  ET +YD+         GKGI ++V + L    ++E+FLPL+L G+    G++    +G   V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGI----GLRTKRFMG---V

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W NLT+       +++I+ DPSLTK+ + LK + K W ++D+GFL E + + + ++ ++
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

A0A6J1DN22 Reverse transcriptase3.3e-2944.38Show/hide
Query:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGV
        MK+RG + +K+V++LIDCG THNFIS +LVD   LP  ET+NY +         GKGI + ++++LPELTI+E+FLPL+L  +        L T+  M V
Subjt:  MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGV

Query:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK
        +W  LTM+ +  +N++ ++ DP+L ++EV LK LA+ W   DQGFL EL+  S + +GQ+
Subjt:  NWTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQK

E5GC18 Ty3-gypsy retrotransposon protein1.1e-2445.86Show/hide
Query:  KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVN
        K++GKV +++V+V+IDCG THNFIS RLV+E ++  TETT Y +         GKG+   V+V LP LT+ EDFLPL+L  +        L  +  M V+
Subjt:  KVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDI---------GKGIYQDVMVHLPELTIQEDFLPLDLRGIG-------LRTKRFMGVN

Query:  WTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE
        W NL M   VR  KV +R D SLT++ + LKML K W   D+GFL  LQ  D S +E
Subjt:  WTNLTMALKVRTNKVTIRRDPSLTKVEVLLKMLAKLWSKRDQGFLFELQ--DLSMEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGTGCGAGGAAAGGTGGGTAACAAAGATGTGATGGTTTTGATCGATTGTGGCACTACCCATAATTTCATCTCACACCGATTGGTTGATGAACGGGAACTTCCAAA
GACTGAAACTACGAACTACGACATTGGCAAGGGCATTTATCAAGATGTCATGGTACACTTACCGGAGTTAACTATCCAAGAGGATTTCTTACCCTTGGACCTAAGGGGAA
TCGGTCTGAGAACAAAGAGATTCATGGGAGTGAATTGGACAAACTTGACGATGGCCCTCAAAGTAAGGACCAATAAAGTTACAATTAGAAGGGACCCATCATTAACAAAG
GTTGAAGTATTGTTAAAGATGTTAGCGAAATTGTGGTCAAAGCGCGACCAAGGTTTTCTATTTGAGTTGCAAGATCTATCAATGGAAGAACAAGGGCAAAAGAGAAAAGG
CAATGATAGTTGCCCAATGAGATACAAAAACTTTTGTAATAATCTACATGGCGATAGTGCTGCCAATACAGAAATGGTATCATTATCTGCTGGGGCAAAAATTTACCCTG
TTGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGTGCGAGGAAAGGTGGGTAACAAAGATGTGATGGTTTTGATCGATTGTGGCACTACCCATAATTTCATCTCACACCGATTGGTTGATGAACGGGAACTTCCAAA
GACTGAAACTACGAACTACGACATTGGCAAGGGCATTTATCAAGATGTCATGGTACACTTACCGGAGTTAACTATCCAAGAGGATTTCTTACCCTTGGACCTAAGGGGAA
TCGGTCTGAGAACAAAGAGATTCATGGGAGTGAATTGGACAAACTTGACGATGGCCCTCAAAGTAAGGACCAATAAAGTTACAATTAGAAGGGACCCATCATTAACAAAG
GTTGAAGTATTGTTAAAGATGTTAGCGAAATTGTGGTCAAAGCGCGACCAAGGTTTTCTATTTGAGTTGCAAGATCTATCAATGGAAGAACAAGGGCAAAAGAGAAAAGG
CAATGATAGTTGCCCAATGAGATACAAAAACTTTTGTAATAATCTACATGGCGATAGTGCTGCCAATACAGAAATGGTATCATTATCTGCTGGGGCAAAAATTTACCCTG
TTGACTAA
Protein sequenceShow/hide protein sequence
MKVRGKVGNKDVMVLIDCGTTHNFISHRLVDERELPKTETTNYDIGKGIYQDVMVHLPELTIQEDFLPLDLRGIGLRTKRFMGVNWTNLTMALKVRTNKVTIRRDPSLTK
VEVLLKMLAKLWSKRDQGFLFELQDLSMEEQGQKRKGNDSCPMRYKNFCNNLHGDSAANTEMVSLSAGAKIYPVD