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Carg24184 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24184
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S acidic ribosomal protein P1-like
Genome locationCarg_Chr06:6165770..6167478
RNA-Seq ExpressionCarg24184
SyntenyCarg24184
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006414 - translational elongation (biological process)
GO:0032147 - activation of protein kinase activity (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0030295 - protein kinase activator activity (molecular function)
GO:0043021 - ribonucleoprotein complex binding (molecular function)
InterPro domainsIPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597015.1 60S acidic ribosomal protein P1-2, partial [Cucurbita argyrosperma subsp. sororia]2.7e-49100Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

XP_008437779.1 PREDICTED: 60S acidic ribosomal protein P1-like [Cucumis melo]2.5e-4289.38Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK
        MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI+NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPK
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

XP_022951343.1 60S acidic ribosomal protein P1-like [Cucurbita moschata]2.7e-49100Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

XP_022974253.1 60S acidic ribosomal protein P1-like [Cucurbita maxima]6.1e-4999.1Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

XP_038883955.1 60S acidic ribosomal protein P1-like [Benincasa hispida]1.9e-4289.38Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK
        MS GEIACSYAALILYDDNIP+TAEK+AT+VKAA V + ESYWF LFAKLAEKRNIGDLI+NVGAGGGAAVAAAVPA G AGGAAAAAAPPPEEKKEEPK
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A0A0L5M7 Uncharacterized protein1.3e-4187.61Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK
        MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+ LFAKLAEKR+IGDLI+NVGAGGGAAVAAA PAGG AGG AAAAAPPPEEKKEEPK
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A1S3AUG9 60S acidic ribosomal protein P1-like1.2e-4289.38Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK
        MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI+NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPK
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A5D3DB57 60S acidic ribosomal protein P1-like1.2e-4289.38Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK
        MS GEIACSYAALILYDDNIP+TAEK+ATLVKAA V + ESYW+SLFAKLAEKRNIGDLI+NVGAGGGAAVAAAVPAGG A G AAAAAPPPEEKKEEPK
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV-EAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGG-AGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESDDDMGFSLFD
Subjt:  EESDDDMGFSLFD

A0A6J1GHG1 60S acidic ribosomal protein P1-like1.3e-49100Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

A0A6J1ICK4 60S acidic ribosomal protein P1-like2.9e-4999.1Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGV+AESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
        SDDDMGFSLFD
Subjt:  SDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O23095 60S acidic ribosomal protein P1-22.7e-3169.03Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK
        +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMNVGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP 
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

P29763 60S acidic ribosomal protein P15.2e-2763.06Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE
        MS  E+AC+YAALIL+DD + +TA+ + T+ KAAGVE E YW +LFAKL  K+++ DLI NVGAGGGAA AAA PA  AGGA AA A P +E+K+EP EE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEE

Query:  SDDDMGFSLFD
          +DMGFSLFD
Subjt:  SDDDMGFSLFD

P52855 60S acidic ribosomal protein P13.7e-3373.21Show/hide
Query:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        M+ GE+AC YAALIL DD I +TAEK+AT+VKAA ++ ESYW +LFAKL EKRN+ DLI++VG+GGGAA VAAA P   AGGAAAAAAP  EEKKEE KE
Subjt:  MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAA-VAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESDDDMGFSLFD
Subjt:  ESDDDMGFSLFD

Q8LCW9 60S acidic ribosomal protein P1-12.3e-3068.75Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMNVGA  GGGA VAAA PA G G AAA AA   E+KK+EP E
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

Q8LEQ0 60S acidic ribosomal protein P1-31.0e-3069.64Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMNVGA  GGGA VAAA PA G GGAAAAA    E+KK+EP E
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT1G01100.1 60S acidic ribosomal protein family1.6e-3168.75Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMNVGA  GGGA VAAA PA G G AAA AA   E+KK+EP E
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT4G00810.1 60S acidic ribosomal protein family1.9e-3269.03Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK
        +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMNVGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP 
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

AT4G00810.2 60S acidic ribosomal protein family1.9e-3269.03Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK
        +VGE+ACSYA +IL D+ I +T++K+ATLVKAAGVE ESYW  LFAK+AEKRN+ DLIMNVGA   GGGA V+AA PA  A G AAAAAP  EEKK+EP 
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA---GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPK

Query:  EESDDDMGFSLFD
        EESD D+GF LFD
Subjt:  EESDDDMGFSLFD

AT5G47700.1 60S acidic ribosomal protein family7.2e-3269.64Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMNVGA  GGGA VAAA PA G GGAAAAA    E+KK+EP E
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD

AT5G47700.2 60S acidic ribosomal protein family7.2e-3269.64Show/hide
Query:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE
        +VGE+ACSYA +IL D+ I +TA+K+ATLVKAAGV  ESYW  LFAK+AEKRN+ DLIMNVGA  GGGA VAAA PA G GGAAAAA    E+KK+EP E
Subjt:  SVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGA--GGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKE

Query:  ESDDDMGFSLFD
        ESD D+GF LFD
Subjt:  ESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTCTCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGA
AGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTTGCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTG
TTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGCTGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTT
GATTAG
mRNA sequenceShow/hide mRNA sequence
CTAGAACGCATTCGTGTTGCGCAGCGAAGAACAGACTGCTTAGAGCCTCGCCGTCGCTCATACTTCTGTGAAAATGTCGGTCGGTGAAATTGCTTGCTCTTATGCTGCTC
TCATCCTCTACGACGACAACATCCCCGTCACCGCAGAGAAGCTTGCCACGCTTGTAAAAGCTGCTGGAGTGGAAGCGGAGTCCTACTGGTTCAGCCTTTTTGCTAAGCTT
GCCGAGAAGCGTAACATTGGGGATTTGATCATGAACGTTGGGGCTGGCGGAGGTGCCGCAGTCGCTGCTGCTGTTCCAGCTGGTGGAGCCGGTGGGGCTGCTGCCGCAGC
TGCACCTCCTCCGGAAGAGAAGAAGGAAGAACCAAAGGAGGAGAGTGACGATGATATGGGATTCAGTTTGTTTGATTAGATTAATCATGGCTTTGCATATTTTGAACTAG
GTTGACTATCTTTCGAATGCCAGAGGGCTTTCTTGTTACTTTTCTGATTTTTAATTTTGGACGTCCGTGACAAAAATTTGCCTGAAGTTTTGTTTTGAATTTGAATTTGA
TCGCATCTTTTTGGTTTATATATATCTTATGTCCTCTCAATAGCTAGGCATATATGTTTTGGATGGTTGTTGCTTCTATGCGTTTCTGAACCTCACTTTCAGTTGCCAAA
TTCTTCTTCAATTGGGAGGAAACTGAGCCTTATGATATGGAACAATTTTAACTTTTTAGAATGAATCTGGCTAAAATCATTAATTATTTCTGATTCTTGTAACCATACAC
CAATTTGTGACCTGATCTTGCGTTATGATCATTCACTAACATGGGTATGATTTTCCATACATTCTTTCCCTTCTGTAATTTACTTTTTTTGTGGAGTACCAAAAAAAATT
AGATAAAGTACTCGTGTACGCACAAACGAAGAGTTTGATTGATGCAAAATTACGGTTGAACATATTAAGTGTGTCAAGAACTTGATATAAATTTGGACATGCAGCTGGGA
GGTTAATTGGCCAATCTATCTCACATACCATGTAGTTGCCTAAGGTTGGGGGCATGATTCCCTGGTACGTTCAACTCCACTAATTACCTGCTTGATCAATGCCCTGCCTA
GGATTGGATCCACCGTAG
Protein sequenceShow/hide protein sequence
MSVGEIACSYAALILYDDNIPVTAEKLATLVKAAGVEAESYWFSLFAKLAEKRNIGDLIMNVGAGGGAAVAAAVPAGGAGGAAAAAAPPPEEKKEEPKEESDDDMGFSLF
D