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Carg24189 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24189
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein mago nashi homolog
Genome locationCarg_Chr06:6137311..6139163
RNA-Seq ExpressionCarg24189
SyntenyCarg24189
Gene Ontology termsGO:0008380 - RNA splicing (biological process)
GO:0035145 - exon-exon junction complex (cellular component)
InterPro domainsIPR004023 - Mago nashi protein
IPR036605 - Mago nashi superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028486.1 Protein mago nashi-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]7.9e-51100Show/hide
Query:  MSGEDWRMEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKSTSPLLFSGSASNHLRQREHLSIEGQELLELEALTDGFLRSAVPQI
        MSGEDWRMEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKSTSPLLFSGSASNHLRQREHLSIEGQELLELEALTDGFLRSAVPQI
Subjt:  MSGEDWRMEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKSTSPLLFSGSASNHLRQREHLSIEGQELLELEALTDGFLRSAVPQI

Query:  NID
        NID
Subjt:  NID
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
P49029 Protein mago nashi homolog6.8e-0545.61Show/hide
Query:  MSGEDWR-MEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKST
        MSGE+ +  +FY   YVGHKGKF          P  S     +SNYKNDTMI +++T
Subjt:  MSGEDWR-MEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKST
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCGAGGATTGGAGAATGGAGTTTTACTTTGAGATATATGTGGGGCACAAAGGCAAATTTGACACGAATTCTTGGAGTTCGAATTCCGACCCGATGGCAAGCTT
CGCTACGCTAACACATTCCAACTACAAGAACGACACCATGATCGCAAGGAAGTCTACCTCACCCCTGCTGTTCTCCGGGAGTGCGTCGAATCATCTCCGACAGCGAGAAC
ATTTATCTATTGAGGGCCAAGAGCTTCTAGAGCTTGAAGCACTTACAGACGGATTTCTAAGGTCAGCAGTTCCTCAGATCAACATAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGCGAGGATTGGAGAATGGAGTTTTACTTTGAGATATATGTGGGGCACAAAGGCAAATTTGACACGAATTCTTGGAGTTCGAATTCCGACCCGATGGCAAGCTT
CGCTACGCTAACACATTCCAACTACAAGAACGACACCATGATCGCAAGGAAGTCTACCTCACCCCTGCTGTTCTCCGGGAGTGCGTCGAATCATCTCCGACAGCGAGAAC
ATTTATCTATTGAGGGCCAAGAGCTTCTAGAGCTTGAAGCACTTACAGACGGATTTCTAAGGTCAGCAGTTCCTCAGATCAACATAGATTAA
Protein sequenceShow/hide protein sequence
MSGEDWRMEFYFEIYVGHKGKFDTNSWSSNSDPMASFATLTHSNYKNDTMIARKSTSPLLFSGSASNHLRQREHLSIEGQELLELEALTDGFLRSAVPQINID