CuGenDBv2

Gene ID	Carg24204
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	B3 domain-containing protein At2g31420-like
Genome location	Carg_Chr12:8362954..8368467
RNA-Seq Expression	Carg24204
Synteny	Carg24204
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR005508 - B3 domain-containing protein At2g31720-like IPR015300 - DNA-binding pseudobarrel domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586098.1 hypothetical protein SDJN03_18831, partial [Cucurbita argyrosperma subsp. sororia]

4.3e-76

67.38

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Query:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
        MSVSPYPS SKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEG     
Subjt:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED

Query:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
                                                                     QRVSPM LTKGKI+EHD Y  TTHWNSFV KNCLK G+L
Subjt:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL

Query:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        IQLWSFRRVRLVDI+NEIFTSDLYFALNTMDGR
Subjt:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

KAG6586099.1 hypothetical protein SDJN03_18832, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-74

66.95

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Query:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
        MSVSP  SMS  R  FF+ +TPD+PTRMRK                                                                  +IED
Subjt:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED

Query:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
        MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
Subjt:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL

Query:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
Subjt:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

KAG7020922.1 hypothetical protein SDJN02_17610, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.8e-133

100

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Query:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
        MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
Subjt:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED

Query:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
        MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
Subjt:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL

Query:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGRWGIE
        IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGRWGIE
Subjt:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGRWGIE

XP_022938318.1 B3 domain-containing protein At2g31420-like [Cucurbita moschata]

4.2e-71

96.38

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Query:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL
        ++IEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPM LTKGKI+EHDVYLFTTHWNSFVDKNCL
Subjt:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL

Query:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        KFGNLIQLWSFRRVRL+DIDNEIFTSDLYFALNTMDGR
Subjt:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

XP_022938320.1 B3 domain-containing protein At1g05930-like [Cucurbita moschata]

6.2e-75

66.95

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Query:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
        MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILF FITPDEEKLLNDANG MEVKILDEG     
Subjt:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED

Query:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
                                                                     QRVSPM LTKGKI+EHD Y  TTHWNSFV KNCLK G+L
Subjt:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL

Query:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        IQLWSFRRVRLVDI+NEIFTSDLYFALNTMDGR
Subjt:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CX35 putative B3 domain-containing protein At2g27410

1.8e-16

32.73

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Query:  KWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFH-FITPDEEKLLNDANGFMEVKILDEGQRIEDMHGYNLQMV
        K R A  L  TP+MP  MR +I E+ GY +QLVI K+L  TDMN+  GRL L  KK+  H F+T +E KLLN                    H  N    
Subjt:  KWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFH-FITPDEEKLLNDANGFMEVKILDEGQRIEDMHGYNLQMV

Query:  IYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNLIQLWSFRRV
                  N K G                            ++V I+D   +   + L K KI   D+Y   T WNSFV++  L+ G+ IQLWSFR+ 
Subjt:  IYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNLIQLWSFRRV

Query:  RLVDID--NEIFTSDLYFAL
           + +   +I TS L+ A+
Subjt:  RLVDID--NEIFTSDLYFAL

A0A6J1FDQ3 B3 domain-containing protein At2g31420-like

1.6e-60

83.33

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Query:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL
        ++IEDMHGYNLQ+VI+K+LI+ DMN+K GR+FF+IK +FFDFLTP EKE+LNDANGV+EVKIVDEAQRVSPM LTKGKIK+ DVY FTTHWNSFVDKNCL
Subjt:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL

Query:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        K G+LIQLWSFRRVRLVDIDNEIFTSDLYFALNT+DGR
Subjt:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

A0A6J1FIJ8 B3 domain-containing protein At2g31420-like

2.0e-71

96.38

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Query:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL
        ++IEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPM LTKGKI+EHDVYLFTTHWNSFVDKNCL
Subjt:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL

Query:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        KFGNLIQLWSFRRVRL+DIDNEIFTSDLYFALNTMDGR
Subjt:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

A0A6J1FJF6 B3 domain-containing protein At1g05930-like

3.0e-75

66.95

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Query:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED
        MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILF FITPDEEKLLNDANG MEVKILDEG     
Subjt:  MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIED

Query:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL
                                                                     QRVSPM LTKGKI+EHD Y  TTHWNSFV KNCLK G+L
Subjt:  MHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNL

Query:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        IQLWSFRRVRLVDI+NEIFTSDLYFALNTMDGR
Subjt:  IQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

A0A6J1I325 B3 domain-containing protein At2g31420-like

3.4e-71

95.65

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Query:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL
        ++IEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKN+FFDFLTPKEKE+LNDANGV+EVKIVDEAQRVSPM LTKGKIKEHDVYLFTTHWNSFVDKNCL
Subjt:  QRIEDMHGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCL

Query:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
        KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR
Subjt:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFALNTMDGR

SwissProt top hits

e value

%identity

Alignment

Q9XIP5 Putative B3 domain-containing protein At2g27410

4.1e-05

30.43

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Query:  HGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFF-DFLTPKEKEILND------ANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVD--K
        +GYN +++  ++L   D+ K + R+    K +   DFLT  E  I+++       NGV  V  VD       + L K K+K + +Y+F   W + +D  K
Subjt:  HGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFF-DFLTPKEKEILND------ANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVD--K

Query:  NCLKFGNLIQLWSFR
           K  ++  LWSFR
Subjt:  NCLKFGNLIQLWSFR

Arabidopsis top hits

e value

%identity

Alignment

AT2G27410.1 Domain of unknown function (DUF313)

2.9e-06

30.43

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Query:  HGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFF-DFLTPKEKEILND------ANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVD--K
        +GYN +++  ++L   D+ K + R+    K +   DFLT  E  I+++       NGV  V  VD       + L K K+K + +Y+F   W + +D  K
Subjt:  HGYNLQMVIYKKLIDIDMNKKDGRMFFQIKNIFF-DFLTPKEKEILND------ANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVD--K

Query:  NCLKFGNLIQLWSFR
           K  ++  LWSFR
Subjt:  NCLKFGNLIQLWSFR

AT5G24050.1 Domain of unknown function (DUF313)

3.6e-04

28.79

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Query:  QMVIYKKLIDIDMNKKDGRMFFQIKNIF-FDFLTPKEKEILND---ANGVIEVK--IVDEAQRVSPMLLTKGKIKEHD-----VYLFTTHWNSFVDKNCL
        +++  K L   D+N    R+     N+   DFLT  E  I+N+    N  I V   +VD+  +   ++L + ++K+        Y     WN  V+ N L
Subjt:  QMVIYKKLIDIDMNKKDGRMFFQIKNIF-FDFLTPKEKEILND---ANGVIEVK--IVDEAQRVSPMLLTKGKIKEHD-----VYLFTTHWNSFVDKNCL

Query:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFAL
        K G+ I LWSFR   ++    E  +S L   L
Subjt:  KFGNLIQLWSFRRVRLVDIDNEIFTSDLYFAL

Sequences

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CDS sequence

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ATGTCAGTTTCTCCATATCCATCGATGTCAAAGTGGCGCAATGCATTCTTTCTAATCACAACGCCGGACATGCCAACTCGGATGCGCAAGCAGATCGAGGAGATGCAAGG
ATACAATCTCCAATTGGTGATTCATAAGAAATTAATAGAAACTGATATGAACGAGAAAGATGGCCGTTTGTTTCTTATAATCAAGAAAATCTTATTCCATTTCATCACCC
CAGACGAGGAGAAGCTCTTGAATGATGCAAACGGATTCATGGAAGTCAAGATTCTTGATGAGGGTCAAAGGATCGAGGACATGCATGGATACAATCTCCAGATGGTGATT
TATAAGAAATTGATAGATATTGATATGAACAAGAAAGATGGCCGTATGTTTTTTCAAATCAAGAATATATTTTTCGATTTCCTCACCCCAAAGGAGAAGGAGATCTTGAA
TGATGCAAACGGAGTCATCGAAGTCAAGATTGTCGATGAGGCTCAAAGGGTGAGTCCCATGCTCTTGACCAAAGGCAAGATTAAAGAACATGATGTTTATCTTTTTACCA
CTCATTGGAATTCTTTTGTCGACAAAAATTGCTTGAAATTTGGCAACCTCATCCAACTTTGGAGTTTCAGAAGAGTTCGACTCGTAGACATCGATAATGAAATATTCACC
TCTGATCTTTATTTTGCGTTGAATACCATGGATGGCCGATGGGGCATCGAGTAA

mRNA sequence

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Protein sequence

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MSVSPYPSMSKWRNAFFLITTPDMPTRMRKQIEEMQGYNLQLVIHKKLIETDMNEKDGRLFLIIKKILFHFITPDEEKLLNDANGFMEVKILDEGQRIEDMHGYNLQMVI
YKKLIDIDMNKKDGRMFFQIKNIFFDFLTPKEKEILNDANGVIEVKIVDEAQRVSPMLLTKGKIKEHDVYLFTTHWNSFVDKNCLKFGNLIQLWSFRRVRLVDIDNEIFT
SDLYFALNTMDGRWGIE

Carg24204 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome