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Carg24222 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24222
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr14:4470830..4471081
RNA-Seq ExpressionCarg24222
SyntenyCarg24222
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581212.1 Polcalcin Ole e 3, partial [Cucurbita argyrosperma subsp. sororia]1.5e-36100Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

XP_022935297.1 probable calcium-binding protein CML28 [Cucurbita moschata]3.4e-3698.8Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFI+LEEFADFAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

XP_022982739.1 polcalcin Syr v 3-like [Cucurbita maxima]4.1e-3495.18Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESDISAAECERIFKRFDANGDGMISAAEL DALNGLGVNAEEAKRMMDAIDKDGDGFIS EEFADF K+NRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

XP_023526616.1 probable calcium-binding protein CML28 [Cucurbita pepo subsp. pepo]2.0e-3698.8Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESD+SAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

XP_038874793.1 probable calcium-binding protein CML28 [Benincasa hispida]4.7e-3085.54Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAES +SAA+CERIFKRFDANGDG ISA EL DALNG GV+AE+AKRMMDAIDKDGDG IS EEFA+FAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

TrEMBL top hitse value%identityAlignment
A0A1S4E1G1 polcalcin Bra n 2-like2.5e-2979.52Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MA+S +++A+CERIFKRFDANGDG ISA EL DALNG GV++E+AKRMMDAIDKDGDG+IS +EF+DFAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

A0A6J1F559 probable calcium-binding protein CML281.6e-3698.8Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFI+LEEFADFAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

A0A6J1G9I0 probable calcium-binding protein CML284.3e-2979.52Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MA++ + +AECERIFKRFDANGDG ISA EL DALNG+GV++E+AKRMMDAIDKDGDGFIS +EF +FAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

A0A6J1J5E7 polcalcin Syr v 3-like2.0e-3495.18Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MAESDISAAECERIFKRFDANGDGMISAAEL DALNGLGVNAEEAKRMMDAIDKDGDGFIS EEFADF K+NRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

A0A6J1KB11 probable calcium-binding protein CML284.3e-2979.52Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MA++ + +AECERIFKRFDANGDG ISA EL DALNG+GV++E+AKRMMDAIDKDGDGFIS +EF +FAKDNRALMKDFAKAF
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 31.9e-1861.9Show/hide
Query:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        MA+     AE ERIFKRFDANGDG IS++EL + L  LG V  EE +RMM  ID DGDGFIS EEF  FA+ NR L+KD AK F
Subjt:  MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

P69198 Polcalcin Bra n 28.7e-1965.79Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE +RIFK+FDANGDG ISA+EL DAL  LG V  ++ KRMM  ID DGDG+IS +EF+DFA  NR LMKD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

P69199 Polcalcin Bra r 28.7e-1965.79Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE +RIFK+FDANGDG ISA+EL DAL  LG V  ++ KRMM  ID DGDG+IS +EF+DFA  NR LMKD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

Q39419 Polcalcin Bet v 48.7e-1965.79Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE ERIFKRFDANGDG ISAAEL +AL  LG +  +E K MM  ID DGDGFIS +EF DF + NR L+KD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

Q9SRP7 Probable calcium-binding protein CML283.0e-1968.42Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE +RIFK+FDANGDG ISAAEL DAL  LG V  E+ KRMM  ID DGDG+IS +EF DFA  NR LMKD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

Arabidopsis top hitse value%identityAlignment
AT1G66400.1 calmodulin like 232.9e-0940.48Show/hide
Query:  SAAECERIFKRFDANGDGMISAAELVDALNGLGVNA--EEAKRMMDAIDKDGDGFISLEEFADF-----AKDNRALMKDFAKAF
        S  + +++F+RFD N DG IS  EL D +  L  NA  EE K MM   D DG+GFI L+EF           N + ++D  +AF
Subjt:  SAAECERIFKRFDANGDGMISAAELVDALNGLGVNA--EEAKRMMDAIDKDGDGFISLEEFADF-----AKDNRALMKDFAKAF

AT1G73630.1 EF hand calcium-binding protein family2.9e-0941.43Show/hide
Query:  ECERIFKRFDANGDGMISAAELVDALNGLGVN--AEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMK
        E +++F +FDANGDG IS +EL +    +G +   EE  R++D ID D DGFI+ EEFA   + + + ++
Subjt:  ECERIFKRFDANGDGMISAAELVDALNGLGVN--AEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMK

AT3G03430.1 Calcium-binding EF-hand family protein2.1e-2068.42Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE +RIFK+FDANGDG ISAAEL DAL  LG V  E+ KRMM  ID DGDG+IS +EF DFA  NR LMKD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF

AT3G17470.1 Ca2+-activated RelA/spot homolog1.9e-0840.91Show/hide
Query:  ERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMK
        +R+F   D NGDGMIS  EL++ +  LG   E+A+ MM  +D + DG +S +EF  F K    + K
Subjt:  ERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMK

AT5G17480.1 pollen calcium-binding protein 11.8e-1967.11Show/hide
Query:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF
        AE +RIFK+FDANGDG ISAAEL +AL  LG V A++ KRMM  ID DGDG IS +EF DFA  NR LMKD AK F
Subjt:  AECERIFKRFDANGDGMISAAELVDALNGLG-VNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAGTGACATAAGCGCAGCCGAGTGCGAGAGGATCTTCAAGCGATTCGACGCGAACGGCGACGGGATGATATCGGCGGCGGAGCTGGTCGATGCGTTGAACGG
ATTGGGAGTGAACGCGGAGGAGGCGAAGAGGATGATGGACGCGATTGACAAAGACGGCGATGGGTTCATATCGTTGGAAGAGTTCGCGGATTTCGCGAAGGATAATCGCG
CGTTGATGAAAGATTTTGCGAAGGCGTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAGTGACATAAGCGCAGCCGAGTGCGAGAGGATCTTCAAGCGATTCGACGCGAACGGCGACGGGATGATATCGGCGGCGGAGCTGGTCGATGCGTTGAACGG
ATTGGGAGTGAACGCGGAGGAGGCGAAGAGGATGATGGACGCGATTGACAAAGACGGCGATGGGTTCATATCGTTGGAAGAGTTCGCGGATTTCGCGAAGGATAATCGCG
CGTTGATGAAAGATTTTGCGAAGGCGTTTTAA
Protein sequenceShow/hide protein sequence
MAESDISAAECERIFKRFDANGDGMISAAELVDALNGLGVNAEEAKRMMDAIDKDGDGFISLEEFADFAKDNRALMKDFAKAF