; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24224 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24224
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiondouble-stranded RNA-binding protein 4-like isoform X2
Genome locationCarg_Chr14:4479043..4481506
RNA-Seq ExpressionCarg24224
SyntenyCarg24224
Gene Ontology termsGO:0016075 - rRNA catabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0004525 - ribonuclease III activity (molecular function)
InterPro domainsIPR011907 - Ribonuclease III
IPR014720 - Double-stranded RNA-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6581214.1 Double-stranded RNA-binding protein 4, partial [Cucurbita argyrosperma subsp. sororia]2.4e-7897.48Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVL DAILI SSASAPVSSPKPSDLTQLFLYKNHLHE+TQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

KAG7017947.1 Double-stranded RNA-binding protein 1 [Cucurbita argyrosperma subsp. argyrosperma]1.8e-81100Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEG
        DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEG
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEG

XP_022935532.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita moschata]4.8e-7998.11Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

XP_022935533.1 double-stranded RNA-binding protein 4-like isoform X2 [Cucurbita moschata]4.8e-7998.11Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

XP_023526614.1 double-stranded RNA-binding protein 4-like isoform X1 [Cucurbita pepo subsp. pepo]8.1e-7998.11Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPP VLPDAILI S+ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

TrEMBL top hitse value%identityAlignment
A0A6J1F5U3 double-stranded RNA-binding protein 4-like isoform X12.3e-7998.11Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

A0A6J1FAT0 double-stranded RNA-binding protein 4-like isoform X22.3e-7998.11Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSA AVVPAVIPVENSNTPQLESDTRPPPVLPDAILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

A0A6J1J1D4 double-stranded RNA-binding protein 4-like isoform X21.5e-7896.86Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPPPVLP AILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

A0A6J1J4E3 double-stranded RNA-binding protein 4-like isoform X11.5e-7896.86Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPPPVLP AILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

A0A6J1J9P9 double-stranded RNA-binding protein 4-like isoform X31.5e-7896.86Show/hide
Query:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
        MVEESGTVEAVPQQQSSFPPDSAPAVVPA+IPVE+SNTPQLESDTRPPPVLP AILI SSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF
Subjt:  MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTF

Query:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
        DEGSQG+PKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE
Subjt:  DEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHE

SwissProt top hitse value%identityAlignment
O04492 Double-stranded RNA-binding protein 12.9e-1038.82Show/hide
Query:  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAK
        S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S   F NR+AAEQ AA +AL  ++K ++
Subjt:  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAK

Q0DJA3 Double-stranded RNA-binding protein 31.1e-0933.64Show/hide
Query:  LESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARI
        ++  + P P+ P+    ++++ AP+ +     +   +++K+ L EY QK+ +  P Y T  EG    P ++STVV++   Y S   F NR+AAEQ AA +
Subjt:  LESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARI

Query:  ALEYISK
        AL  I K
Subjt:  ALEYISK

Q0IQN6 Double-stranded RNA-binding protein 81.1e-0936.54Show/hide
Query:  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALE
        D  P P+ P+    ++++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG    P ++STVV++   Y S   F NR+AAEQ AA +AL 
Subjt:  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALE

Query:  YISK
         I K
Subjt:  YISK

Q0IV63 Double-stranded RNA-binding protein 71.1e-0936.54Show/hide
Query:  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALE
        D  P P+ P+    ++++ AP  +     +   +++K+ L EY QK+ +  P Y TF EG    P ++STVV++   Y S   F NR+AAEQ AA +AL 
Subjt:  DTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALE

Query:  YISK
         I K
Subjt:  YISK

Q5N8Z0 Double-stranded RNA-binding protein 11.2e-0535.96Show/hide
Query:  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKA
        +S P+  P P    Q   YK+ L  Y QK    LP YQT  EG     +++S V VD   + SP  F   + AE  AA++AL  + ++A
Subjt:  ASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKA

Arabidopsis top hitse value%identityAlignment
AT1G09700.1 dsRNA-binding domain-like superfamily protein2.0e-1138.82Show/hide
Query:  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAK
        S+   S ++  +++K+ L EY QK ++P PVY+   EG      ++STV++D V Y S   F NR+AAEQ AA +AL  ++K ++
Subjt:  SSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAK

AT2G28380.1 dsRNA-binding protein 21.3e-0535.21Show/hide
Query:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK
        +YKN L E  Q+S   LP Y    EG    P++++TV  +   + SP      R AE  AA +AL  +S +
Subjt:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK

AT3G26932.1 dsRNA-binding protein 32.2e-0535.21Show/hide
Query:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK
        +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  AA +AL  +S K
Subjt:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK

AT3G26932.2 dsRNA-binding protein 32.2e-0535.21Show/hide
Query:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK
        +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  AA +AL  +S K
Subjt:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK

AT5G41070.1 dsRNA-binding protein 51.1e-0432.39Show/hide
Query:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK
        +YKN L E  Q+S   LP Y    EG    P+++++V  +   + SP      R AE  AA ++L  +S +
Subjt:  LYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKYRSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAAGAATCCGGAACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAA
TACTCCTCAGCTTGAATCGGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTTCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGA
CTCAACTCTTCCTGTACAAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATAT
AGGTCAACTGTTGTGGTTGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAA
AAAGGCTAAGGATGATGGATTTGTTCTCCTTCATGAGGGATAG
mRNA sequenceShow/hide mRNA sequence
CAGACCGGAAATTTCCCCTGCTATTCATTCATTGCCATTGCCTAATTCTTCCCATTTCAATTTGTTCTCATCGAGTTTCGATAACATTCGATCATGGTGGAAGAATCCGG
AACAGTTGAAGCAGTTCCGCAGCAACAATCTTCATTCCCGCCAGATTCGGCTCCGGCTGTTGTTCCAGCTGTTATTCCGGTGGAAAACTCTAATACTCCTCAGCTTGAAT
CGGATACTCGTCCTCCACCTGTTTTACCGGACGCAATTCTGATTTCGAGTTCGGCTTCAGCTCCGGTTTCGTCTCCGAAACCCTCTGATCTGACTCAACTCTTCCTGTAC
AAAAATCATTTGCATGAGTACACTCAAAAGTCAAGGATACCATTACCAGTATATCAGACTTTTGATGAAGGATCTCAAGGCGTACCTAAATATAGGTCAACTGTTGTGGT
TGATGAGGTACATTATGTGTCTCCTAATACGTTCCGTAATCGAAGGGCAGCTGAACAAGATGCTGCAAGAATTGCCCTCGAGTACATATCAAAAAAGGCTAAGGATGATG
GATTTGTTCTCCTTCATGAGGGATAG
Protein sequenceShow/hide protein sequence
MVEESGTVEAVPQQQSSFPPDSAPAVVPAVIPVENSNTPQLESDTRPPPVLPDAILISSSASAPVSSPKPSDLTQLFLYKNHLHEYTQKSRIPLPVYQTFDEGSQGVPKY
RSTVVVDEVHYVSPNTFRNRRAAEQDAARIALEYISKKAKDDGFVLLHEG