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Carg24226 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24226
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationCarg_Chr14:4485395..4485817
RNA-Seq ExpressionCarg24226
SyntenyCarg24226
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060761.1 formin-like protein 3 [Cucumis melo var. makuwa]2.8e-4368.71Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG
        M  SAAI LS SFL L L LA SQ  SP  +DPQ+P++EIKCGSCPCSNPC++Q     PPPPPP  C P +   PPPPRFIYT  SP PPPPRF YTTG
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG

Query:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        VPGNLY+IDANN WYYFSGTT  +P  AA+VVALGCGAL+LM F KW
Subjt:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

KAG6581215.1 hypothetical protein SDJN03_21217, partial [Cucurbita argyrosperma subsp. sororia]7.1e-7197.2Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF---PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLADSQPVSPVD QDPNSEIKCGSCPCSNPCVKQF   PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF---PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

KAG7017949.1 hypothetical protein SDJN02_19815, partial [Cucurbita argyrosperma subsp. argyrosperma]1.2e-73100Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQ
        MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQ
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQ

Query:  IDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        IDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
Subjt:  IDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

XP_022984145.1 probable pathogenesis-related protein ARB_02861 [Cucurbita maxima]7.9e-7096.48Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF--PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL
        MAPSAAIPLSLSFLFLFLHLA+SQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF  PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF--PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL

Query:  YQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        YQIDANNRWYYFSGTTRN  ATAALVVALGCGALNLMAFGKW
Subjt:  YQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

XP_023528316.1 leucine-rich repeat extensin-like protein 3 [Cucurbita pepo subsp. pepo]3.5e-7095.1Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF---PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN
        MAPSAAIPLSLSFLFLFLHLADSQP SPVDPQDPNSEIKCGSCPCSNPCVKQF   PPPPPPPNCKPALPPPPPPPRFIYT+LSPPPPPRFIYTTGVPGN
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF---PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGN

Query:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        LYQIDANNRWYYFSGTTRN+PATA LVVALGCGALNLMAFGKW
Subjt:  LYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

TrEMBL top hitse value%identityAlignment
A0A0A0L7R0 Uncharacterized protein3.0e-4366.67Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF-------PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIY
        MAP AAI LS SFL   L LA+SQ  SP  VDPQ+P++EIKCGSCPCSNPC++Q        PPPPPP  C P +   PPPPRFIYT+ SP PPPPRF Y
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF-------PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIY

Query:  TTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        TTGVPGNLY+IDANN WYYFSGT R +P  AA+ VA+GCGAL+LM F KW
Subjt:  TTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

A0A2N9I535 Uncharacterized protein9.5e-2154.05Show/hide
Query:  DPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPP-----PPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALV
        D ++ N+E+KCG+CPC NPC +Q PPPPPPP   P  PPPPP     P    +T  +PPPPPRFIY TGVPGNLY  D  N W Y+SG  RN    + L+
Subjt:  DPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPP-----PPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALV

Query:  VALGCGALNLM
        V  GCG L L+
Subjt:  VALGCGALNLM

A0A5A7V4T2 Formin-like protein 31.4e-4368.71Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG
        M  SAAI LS SFL L L LA SQ  SP  +DPQ+P++EIKCGSCPCSNPC++Q     PPPPPP  C P +   PPPPRFIYT  SP PPPPRF YTTG
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSP--VDPQDPNSEIKCGSCPCSNPCVKQF----PPPPPPPNCKPALPPPPPPPRFIYTSLSP-PPPPRFIYTTG

Query:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        VPGNLY+IDANN WYYFSGTT  +P  AA+VVALGCGAL+LM F KW
Subjt:  VPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

A0A6J1GAW3 leucine-rich repeat extensin-like protein 24.0e-2758.04Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCP-CSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPP-RFIYTTGVPGNL
        MAPSAAI     FL L L    + P     P DP++EI C S   CSNP V+Q  P PP P      PPP PPPRF YT+LS PPPP RFIYTTGVP +L
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCP-CSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPP-RFIYTTGVPGNL

Query:  YQIDANNRWYYFSGTTRNQPATAAL-VVALGCGALNLMAFGKW
        YQ D  NRWYYFSG     PA AAL VV L CGAL+L+ FGKW
Subjt:  YQIDANNRWYYFSGTTRNQPATAAL-VVALGCGALNLMAFGKW

A0A6J1J7W0 probable pathogenesis-related protein ARB_028613.8e-7096.48Show/hide
Query:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF--PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL
        MAPSAAIPLSLSFLFLFLHLA+SQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF  PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL
Subjt:  MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQF--PPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNL

Query:  YQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW
        YQIDANNRWYYFSGTTRN  ATAALVVALGCGALNLMAFGKW
Subjt:  YQIDANNRWYYFSGTTRNQPATAALVVALGCGALNLMAFGKW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G23040.1 hydroxyproline-rich glycoprotein family protein1.6e-0748Show/hide
Query:  VDPQDPNSEIKCGSCPCSNPCVKQFPPP-PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID
        +D  DP   IKC      NP     PPP PPPP C P    PPPPP+ + +   PPPP  F+Y TG PGNLY +D
Subjt:  VDPQDPNSEIKCGSCPCSNPCVKQFPPP-PPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQID

AT1G70990.1 proline-rich family protein1.5e-0538.61Show/hide
Query:  AIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKP----ALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQI
        A  L  + +FL   +  +   S  + +     IKC       PC++  PPP PPP   P    A PPPP PP     S  PPPP  +IY TG PG LY I
Subjt:  AIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKP----ALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQI

Query:  D
        D
Subjt:  D

AT3G03350.1 NAD(P)-binding Rossmann-fold superfamily protein5.0e-0647.06Show/hide
Query:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN
        L PPPP   +   S S PPPP+++Y TGVPG LY+ + +++W Y S   RN
Subjt:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRN

AT3G03350.2 NAD(P)-binding Rossmann-fold superfamily protein4.1e-0841.18Show/hide
Query:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALN
        L PPPP   +   S S PPPP+++Y TGVPG LY+ + +++W Y S   RN      ++V +G G +N
Subjt:  LPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYFSGTTRNQPATAALVVALGCGALN

AT3G22800.1 Leucine-rich repeat (LRR) family protein8.0e-0445.59Show/hide
Query:  IKCGSCPCSNPC----VKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPP--PPRFIYTTGVPGNLY
        I C S  CS P         PPPPPPP   P  PPPPPPP ++Y S  PPP  PP ++Y    P  +Y
Subjt:  IKCGSCPCSNPC----VKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPP--PPRFIYTTGVPGNLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTCGCCGGTCGATCCGCAAGATCCCAATTCCGA
AATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCA
GGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTC
TCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCTTCCGCCGCCATTCCGCTGTCCCTTTCGTTTCTCTTCCTCTTCCTTCACCTCGCCGACTCCCAACCCGTCTCGCCGGTCGATCCGCAAGATCCCAATTCCGA
AATAAAATGTGGATCATGCCCTTGTTCCAACCCATGTGTTAAACAATTCCCTCCTCCGCCGCCGCCGCCGAATTGCAAACCAGCGCTGCCGCCTCCACCACCGCCTCCCA
GGTTTATTTATACATCGCTGTCTCCACCACCACCTCCAAGGTTTATTTACACAACAGGTGTACCCGGTAACCTGTATCAGATCGATGCCAATAACCGTTGGTATTACTTC
TCCGGCACAACCAGGAACCAGCCAGCCACGGCGGCGCTCGTGGTGGCGCTTGGCTGTGGAGCTTTGAATCTCATGGCGTTTGGTAAGTGGTAA
Protein sequenceShow/hide protein sequence
MAPSAAIPLSLSFLFLFLHLADSQPVSPVDPQDPNSEIKCGSCPCSNPCVKQFPPPPPPPNCKPALPPPPPPPRFIYTSLSPPPPPRFIYTTGVPGNLYQIDANNRWYYF
SGTTRNQPATAALVVALGCGALNLMAFGKW