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Carg24239 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24239
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCoiled-coil domain-containing protein 16
Genome locationCarg_Chr14:4600051..4600798
RNA-Seq ExpressionCarg24239
SyntenyCarg24239
Gene Ontology termsGO:0033260 - nuclear DNA replication (biological process)
GO:0033314 - mitotic DNA replication checkpoint (biological process)
GO:0044773 - mitotic DNA damage checkpoint (biological process)
GO:0048478 - replication fork protection (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036236 - Zinc finger C2H2 superfamily
IPR040050 - Zinc finger protein 830-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7017962.1 Zinc finger protein [Cucurbita argyrosperma subsp. argyrosperma]7.5e-32100Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVMLYQIKSY
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVMLYQIKSY
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVMLYQIKSY
XP_004148048.1 zinc finger protein 830 [Cucumis sativus]3.6e-2693.85Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNELDQPVCRVCD+VLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
XP_022934879.1 zinc finger protein 830-like [Cucurbita moschata]4.7e-2695.38Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAH SSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
XP_022983328.1 zinc finger protein 830-like [Cucurbita maxima]7.2e-2796.92Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
XP_023529023.1 zinc finger protein 830-like [Cucurbita pepo subsp. pepo]7.2e-2796.92Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
TrEMBL top hitse value%identityAlignment
A0A0A0LM08 Coiled-coil domain-containing protein 161.7e-2693.85Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNELDQPVCRVCD+VLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
A0A6J1F3U0 Coiled-coil domain-containing protein 162.3e-2695.38Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAH SSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
A0A6J1GB85 Coiled-coil domain-containing protein 162.3e-2693.85Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNEL+QPVCRVCDIVLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
A0A6J1J7G2 Coiled-coil domain-containing protein 163.5e-2796.92Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
A0A6J1KAT8 Coiled-coil domain-containing protein 162.3e-2693.85Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAKRKALFRAKLNAQKK+KRIDSPLVRYNEL+QPVCRVCDIVLKSEAYWDAHQSSRRHHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
SwissProt top hitse value%identityAlignment
Q63ZM9 Zinc finger protein 8304.3e-0640.98Show/hide
Query:  AQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
        AQ + + L +AK      +KRI+SPL +YN L    C VC+ ++KSE  W AH   ++H E
Subjt:  AQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
Q6DJ13 Zinc finger protein 8305.6e-0641.67Show/hide
Query:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
        Q + + L +AK      +KRI+SPL +YN L   +C VC+I +KSE  W AH   ++H E
Subjt:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
Q8R1N0 Zinc finger protein 8301.1e-0436.67Show/hide
Query:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
        Q + + L R K       KRI+SP  +YN L Q  C +C+  +KSE  W  H   ++H E
Subjt:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
Q96NB3 Zinc finger protein 8302.4e-0435Show/hide
Query:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
        Q + + L + K       KRI+SP  +YN L Q  C +C+  +KSE  W  H   ++H E
Subjt:  QAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHE
Q9M8S7 Protein ABA AND ROS SENSITIVE 11.7e-2375.38Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAK+KA+FR+KLNA+KK+ RIDSPLVRYNE DQPVCRVC++VLKSE+ WD HQ+SR+HHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
Arabidopsis top hitse value%identityAlignment
AT3G02860.1 zinc ion binding1.2e-2475.38Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAK+KA+FR+KLNA+KK+ RIDSPLVRYNE DQPVCRVC++VLKSE+ WD HQ+SR+HHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
AT3G02860.2 zinc ion binding1.2e-2475.38Show/hide
Query:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM
        MDAQAK+KA+FR+KLNA+KK+ RIDSPLVRYNE DQPVCRVC++VLKSE+ WD HQ+SR+HHE +
Subjt:  MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGCTCAAGCCAAGAGGAAAGCATTGTTTCGTGCTAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCGATTCTCCTCTTGTCAGGTACAATGAATTGGACCAACC
TGTCTGTAGGGTTTGCGACATTGTATTGAAATCAGAGGCTTACTGGGATGCTCACCAGTCTTCTCGCAGACATCATGAGGTGATGCTTTACCAGATCAAATCTTATTAA
mRNA sequenceShow/hide mRNA sequence
GATTTACTGAATCGAAAAAGAAGAACAAAGAATGGGGCACGAGGTTTGAGGCATATTTCGCTCTGAACTAGGTCTGTAAGGAGGAAGAAAGAAGACCGAATGGATGCTCA
AGCCAAGAGGAAAGCATTGTTTCGTGCTAAATTGAACGCCCAGAAGAAGGAAAAGCGCATCGATTCTCCTCTTGTCAGGTACAATGAATTGGACCAACCTGTCTGTAGGG
TTTGCGACATTGTATTGAAATCAGAGGCTTACTGGGATGCTCACCAGTCTTCTCGCAGACATCATGAGGTGATGCTTTACCAGATCAAATCTTATTAA
Protein sequenceShow/hide protein sequence
MDAQAKRKALFRAKLNAQKKEKRIDSPLVRYNELDQPVCRVCDIVLKSEAYWDAHQSSRRHHEVMLYQIKSY