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Carg24269 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24269
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtoporphyrinogen oxidase
Genome locationCarg_Chr15:521063..523514
RNA-Seq ExpressionCarg24269
SyntenyCarg24269
Gene Ontology termsGO:0006782 - protoporphyrinogen IX biosynthetic process (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity (molecular function)
InterPro domainsIPR002937 - Amine oxidase
IPR036188 - FAD/NAD(P)-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578375.1 hypothetical protein SDJN03_22823, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3285Show/hide
Query:  MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSA
        MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVIT             QLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSG TSCYILELSPSH A
Subjt:  MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSA

KAG7015960.1 Protoporphyrinogen oxidase, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-91100Show/hide
Query:  MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSA
        MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSA
Subjt:  MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSA

Query:  QLDFLDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIFLH
        QLDFLDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIFLH
Subjt:  QLDFLDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIFLH

XP_022938651.1 protoporphyrinogen oxidase 2, chloroplastic/mitochondrial isoform X7 [Cucurbita moschata]1.2e-2292.19Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+ SSRKRVAVVGAGVSGLAAAYKLKSHGF+VTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

XP_022992609.1 protoporphyrinogen oxidase 2, chloroplastic/mitochondrial-like isoform X2 [Cucurbita maxima]7.2e-2392.19Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+ SSRKRVAVVGAGVSGLAAAYKLK+HGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

XP_023551401.1 protoporphyrinogen oxidase, chloroplastic/mitochondrial isoform X2 [Cucurbita pepo subsp. pepo]3.2e-2393.75Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+ SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

TrEMBL top hitse value%identityAlignment
A0A6J1FDR3 Protoporphyrinogen oxidase5.9e-2392.19Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+ SSRKRVAVVGAGVSGLAAAYKLKSHGF+VTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

A0A6J1FEP3 Protoporphyrinogen oxidase1.3e-2281.48Show/hide
Query:  LELSPSHSAQLDFLDSAP----SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        L LS S S+ LD +D       SSRKRVAVVGAGVSGLAAAYKLKSHGF+VTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LELSPSHSAQLDFLDSAP----SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

A0A6J1FEP8 Protoporphyrinogen oxidase3.0e-2290.62Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+  SRKRVAVVGAGVSGLAAAYKLKSHGF+VTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

A0A6J1JQC4 Protoporphyrinogen oxidase3.0e-2296.61Show/hide
Query:  SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        +SRKRVAVVGAGVSGLAAAYKLK+HGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

A0A6J1JY02 Protoporphyrinogen oxidase3.5e-2392.19Show/hide
Query:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        + S+ SSRKRVAVVGAGVSGLAAAYKLK+HGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
Subjt:  LDSAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

SwissProt top hitse value%identityAlignment
B5AR80 L-amino-acid oxidase (Fragment)2.2e-0659.57Show/hide
Query:  SAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRS
        SA S+ K V +VGAG+SGL+AAY L + G  VTVLEA  RAGG++R+
Subjt:  SAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRS

O24164 Protoporphyrinogen oxidase, mitochondrial1.6e-2084.75Show/hide
Query:  SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        SS KRVAV+GAGVSGLAAAYKLK HG NVTV EA+G+AGGKLRSVS +GLIWDEGANTM
Subjt:  SSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

P0CC17 L-amino-acid oxidase3.7e-0657.45Show/hide
Query:  SAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRS
        S  S+ KRV +VGAG+SGL+AAY L + G  VTVLEA  RAGG++++
Subjt:  SAPSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRS

Q8S9J1 Protoporphyrinogen oxidase 2, chloroplastic/mitochondrial2.7e-2087.93Show/hide
Query:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        S KRVAVVGAGVSGLAAAYKLKS G NVTV EADGR GGKLRSV  NGLIWDEGANTM
Subjt:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

Q94IG7 Protoporphyrinogen oxidase 21.3e-1970.83Show/hide
Query:  PSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIF
        P S KRVAVVGAGVSGLAAAYKLKS+G NVT+ EAD RAGGKL++V  +GLIWDEGANTM    +  +TS+F
Subjt:  PSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIF

Arabidopsis top hitse value%identityAlignment
AT1G65840.1 polyamine oxidase 49.4e-0540.98Show/hide
Query:  VAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENN
        V V+G+G+SGLAAA  L    F VTVLE+  R GG++ +    G   D GA+ +    + N
Subjt:  VAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENN

AT3G10390.1 Flavin containing amine oxidoreductase family protein8.5e-0643.84Show/hide
Query:  APSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKL--RSVSYN--GLIWDEGANTMASFLENNL
        A SS+  V +VGAG+SGLAAA +L   GF VTVLE   R GG++  + +  N  G   D G + +   L N L
Subjt:  APSSRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKL--RSVSYN--GLIWDEGANTMASFLENNL

AT4G16310.1 LSD1-like 31.7e-0647.54Show/hide
Query:  LSPSHSAQLDFLDSAPS---SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKL
        LS +HS Q+   D  P      K+V V+GAG +GL AA  L+  GF+VTVLEA  R GG++
Subjt:  LSPSHSAQLDFLDSAPS---SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKL

AT5G14220.1 Flavin containing amine oxidoreductase family1.9e-2187.93Show/hide
Query:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        S KRVAVVGAGVSGLAAAYKLKS G NVTV EADGR GGKLRSV  NGLIWDEGANTM
Subjt:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM

AT5G14220.2 Flavin containing amine oxidoreductase family1.9e-2187.93Show/hide
Query:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM
        S KRVAVVGAGVSGLAAAYKLKS G NVTV EADGR GGKLRSV  NGLIWDEGANTM
Subjt:  SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTTCTACTTCTCGATCAGTCCTTTCTTTCTTGTAAAGTCAGAATCCGAACGGTGAATACCAGATCGGTAGAAGAAGGGACTGCACAAGTCATAACGACCCAACT
ACATCTTCTGGACTCAGCGTTATGTTCGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGGCCCAACAAGCTGCTACATTTGGAACTGAGCCCACGTCATACGGCC
CAACTGCATCTTCTGGGCTCAGCGCTATGTCCGGCCCAACAAGCTGCTACATTTTGGAACTGAGCCCAAGTCATTCGGCCCAACTGGATTTTCTGGACTCAGCGCCATCC
TCCAGAAAAAGGGTGGCTGTTGTTGGCGCTGGTGTCAGTGGGCTCGCTGCAGCCTACAAATTGAAATCGCATGGCTTCAATGTTACGGTGCTTGAAGCGGATGGAAGAGC
TGGAGGAAAGCTAAGAAGCGTCTCATACAATGGACTTATCTGGGATGAAGGAGCCAATACAATGGCAAGCTTCCTTGAAAATAATTTGACTAGCATTTTTCTTCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTTCTACTTCTCGATCAGTCCTTTCTTTCTTGTAAAGTCAGAATCCGAACGGTGAATACCAGATCGGTAGAAGAAGGGACTGCACAAGTCATAACGACCCAACT
ACATCTTCTGGACTCAGCGTTATGTTCGACCCAACTACATCTTCTGGACTCAGCGTTATGTTCGGCCCAACAAGCTGCTACATTTGGAACTGAGCCCACGTCATACGGCC
CAACTGCATCTTCTGGGCTCAGCGCTATGTCCGGCCCAACAAGCTGCTACATTTTGGAACTGAGCCCAAGTCATTCGGCCCAACTGGATTTTCTGGACTCAGCGCCATCC
TCCAGAAAAAGGGTGGCTGTTGTTGGCGCTGGTGTCAGTGGGCTCGCTGCAGCCTACAAATTGAAATCGCATGGCTTCAATGTTACGGTGCTTGAAGCGGATGGAAGAGC
TGGAGGAAAGCTAAGAAGCGTCTCATACAATGGACTTATCTGGGATGAAGGAGCCAATACAATGGCAAGCTTCCTTGAAAATAATTTGACTAGCATTTTTCTTCACTAG
Protein sequenceShow/hide protein sequence
MKLLLLDQSFLSCKVRIRTVNTRSVEEGTAQVITTQLHLLDSALCSTQLHLLDSALCSAQQAATFGTEPTSYGPTASSGLSAMSGPTSCYILELSPSHSAQLDFLDSAPS
SRKRVAVVGAGVSGLAAAYKLKSHGFNVTVLEADGRAGGKLRSVSYNGLIWDEGANTMASFLENNLTSIFLH