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Carg24294 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24294
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionVesicle transport protein
Genome locationCarg_Chr20:9740901..9746336
RNA-Seq ExpressionCarg24294
SyntenyCarg24294
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR011691 - Vesicle transport protein SFT2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011099.1 hypothetical protein SDJN02_27897, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-37100Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFICSTF
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFICSTF
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFICSTF
XP_022932027.1 vesicle transport protein SFT2B isoform X2 [Cucurbita moschata]1.3e-3294.94Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
XP_022973824.1 vesicle transport protein SFT2B isoform X2 [Cucurbita maxima]1.3e-3294.94Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
XP_023512398.1 vesicle transport protein SFT2B isoform X2 [Cucurbita pepo subsp. pepo]1.3e-3294.94Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
XP_023522029.1 vesicle transport protein SFT2B-like, partial [Cucurbita pepo subsp. pepo]4.7e-3078.57Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFIC
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ                  SMLVFFNPIKFGIAFTLGNMLSLGRF   C
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFIC
TrEMBL top hitse value%identityAlignment
A0A1S3CDD0 Vesicle transport protein4.5e-2672.73Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDE--ASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDE  ASTATI+D +SSWFMDDFNRNCTLSTKQ                  SMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDE--ASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
A0A6J1EV79 Vesicle transport protein1.5e-2977.32Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ                  SMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
A0A6J1EVH7 Vesicle transport protein6.4e-3394.94Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
A0A6J1IE99 Vesicle transport protein1.5e-2977.32Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ                  SMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
A0A6J1IFS2 Vesicle transport protein6.4e-3394.94Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G23550.1 Got1/Sft2-like vescicle transport protein family3.1e-1952.58Show/hide
Query:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI
        M+KMNQA EKMKMLVG+EV+DE   A  ++++S  FM+D NRNC L+TKQ                  SMLVFFNP+KFGI FTLGN+++LG   F+
Subjt:  MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQ------------------SMLVFFNPIKFGIAFTLGNMLSLGRFVFI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGATGAATCAGGCGTTTGAGAAAATGAAAATGTTGGTAGGAGTTGAGGTGGACGACGAAGCTTCTACTGCTACCATCAATGACGATAACTCTTCCTGGTTTAT
GGACGATTTCAACCGCAATTGCACGCTATCCACCAAACAGTCGATGCTTGTTTTCTTCAATCCAATCAAATTTGGAATAGCTTTCACATTGGGCAACATGCTATCGCTTG
GAAGGTTTGTGTTTATATGTTCTACATTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGATGAATCAGGCGTTTGAGAAAATGAAAATGTTGGTAGGAGTTGAGGTGGACGACGAAGCTTCTACTGCTACCATCAATGACGATAACTCTTCCTGGTTTAT
GGACGATTTCAACCGCAATTGCACGCTATCCACCAAACAGTCGATGCTTGTTTTCTTCAATCCAATCAAATTTGGAATAGCTTTCACATTGGGCAACATGCTATCGCTTG
GAAGGTTTGTGTTTATATGTTCTACATTCTAA
Protein sequenceShow/hide protein sequence
MEKMNQAFEKMKMLVGVEVDDEASTATINDDNSSWFMDDFNRNCTLSTKQSMLVFFNPIKFGIAFTLGNMLSLGRFVFICSTF