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Carg24316 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24316
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGamma-secretase subunit PEN-2
Genome locationCarg_Chr20:10011335..10015315
RNA-Seq ExpressionCarg24316
SyntenyCarg24316
Gene Ontology termsGO:0007219 - Notch signaling pathway (biological process)
GO:0005798 - Golgi-associated vesicle (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0070765 - gamma-secretase complex (cellular component)
InterPro domainsIPR019379 - Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571347.1 putative gamma-secretase subunit PEN-2, partial [Cucurbita argyrosperma subsp. sororia]1.7e-6999.25Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL SHSFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLT
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLT
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLT

KAG7011118.1 putative gamma-secretase subunit PEN-2 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-72100Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

XP_022931973.1 probable gamma-secretase subunit PEN-2 [Cucurbita moschata]6.3e-7299.27Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL SHSFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

XP_022971629.1 probable gamma-secretase subunit PEN-2 [Cucurbita maxima]7.7e-7097.81Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSN NPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL S SFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

XP_023532347.1 probable gamma-secretase subunit PEN-2 [Cucurbita pepo subsp. pepo]1.1e-6389.86Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI
        ME+S N N+NPN NP RIQN VSS IA LWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL  SHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI

Query:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

TrEMBL top hitse value%identityAlignment
A0A0A0LK38 Uncharacterized protein9.2e-6186.86Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        ME  QN N+N N NP    N +SSPI VLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL S SFPRIRPYIVGSAIGF VFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTF+IGGERLFGPVWDKLVMYNLADK+GLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

A0A6J1F097 probable gamma-secretase subunit PEN-23.1e-7299.27Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL SHSFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

A0A6J1G5B2 probable gamma-secretase subunit PEN-28.9e-6489.86Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI
        ME+SQN N+NPN NP RIQN VSS IA LWPTID SLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL  SHSFPRIRPYIVGSAIGFA+FMAI
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI

Query:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

A0A6J1I943 probable gamma-secretase subunit PEN-23.7e-7097.81Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII
        MENSQNSNSN NPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL S SFPRIRPYIVGSAIGFAVFMAII
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAII

Query:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
Subjt:  SSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

A0A6J1L2H7 probable gamma-secretase subunit PEN-24.9e-6289.13Show/hide
Query:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI
        ME+SQN N+ PN NP RIQN VSS IA LWPTID SLGLS EESVSYARRFYKFGFALLPFLWAVNCFYFWPVL  SHSFPRIRPYIVGSAIGFAVFMAI
Subjt:  MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAI

Query:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS
        ISSWALTF+IGGERLFGPVW+KLVMYNLADKLGLTGWS
Subjt:  ISSWALTFAIGGERLFGPVWDKLVMYNLADKLGLTGWS

SwissProt top hitse value%identityAlignment
Q5G235 Gamma-secretase subunit PEN-26.7e-0834.41Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+      P  +  S  +I+ Y+  SA+GF +++ ++S+W   F     +++ P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY

Q6QI68 Gamma-secretase subunit PEN-21.9e-0733.33Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+      P  +  S  +I+ Y+  SA+GF  ++ ++++W   F     +++ P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY

Q9CQR7 Gamma-secretase subunit PEN-21.5e-0734.41Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+      P  +  S  +I+ Y+  SA+GF  ++ I+++W   F     +++ P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY

Q9FY84 Probable gamma-secretase subunit PEN-22.3e-4869.7Show/hide
Query:  QNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAIISSW
        +N N NPNPNP  +  ++SS  A +WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VNCFYFWPVL  S +FP+IR Y+V SAIGF+VF A++S+W
Subjt:  QNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAIISSW

Query:  ALTFAIGGERLFGPVWDKLVMYNLADKLGLTG
        ALTF+IGGE+LFGP++DKLVMYN+AD+LGL+G
Subjt:  ALTFAIGGERLFGPVWDKLVMYNLADKLGLTG

Q9NZ42 Gamma-secretase subunit PEN-28.7e-0834.41Show/hide
Query:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY
        +S EE ++  R++Y  GFA LPFLW VN F+F+      P  +  S  +I+ Y+  SA+GF  ++ +++SW   F     +++ P W  L  Y
Subjt:  LSEEESVSYARRFYKFGFALLPFLWAVNCFYFW------PVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIGGERLFGPVWDKLVMY

Arabidopsis top hitse value%identityAlignment
AT5G09310.1 CONTAINS InterPro DOMAIN/s: Gamma-secretase aspartyl protease complex, presenilin enhancer-2 subunit (InterPro:IPR019379); Has 168 Blast hits to 168 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).1.6e-4969.7Show/hide
Query:  QNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAIISSW
        +N N NPNPNP  +  ++SS  A +WPTIDG LGL+EE SV YARRFYKFGFALLP+LW VNCFYFWPVL  S +FP+IR Y+V SAIGF+VF A++S+W
Subjt:  QNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVL-SSHSFPRIRPYIVGSAIGFAVFMAIISSW

Query:  ALTFAIGGERLFGPVWDKLVMYNLADKLGLTG
        ALTF+IGGE+LFGP++DKLVMYN+AD+LGL+G
Subjt:  ALTFAIGGERLFGPVWDKLVMYNLADKLGLTG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAACTCGCAGAATTCAAACAGCAATCCAAACCCTAATCCGATTCGCATCCAGAATCTTGTATCGTCGCCGATTGCTGTGTTATGGCCGACAATTGATGGCTCACT
GGGGCTGTCGGAGGAAGAATCGGTGAGCTATGCCCGCAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTC
TTAGCTCTCACTCATTTCCTCGCATTCGTCCCTATATTGTTGGCTCAGCTATTGGTTTTGCTGTTTTCATGGCCATTATCTCGTCTTGGGCCTTGACATTTGCCATTGGA
GGTGAACGCCTCTTTGGACCTGTTTGGGATAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAG
mRNA sequenceShow/hide mRNA sequence
GAAAAAGAAAAAGAAAAACCGACGAACATTTTGCCTTAAAACTTCGGTTGGTCTTTGTGTTCAGAGTCGTTGAAATTTGATTGCAATGGAGAACTCGCAGAATTCAAACA
GCAATCCAAACCCTAATCCGATTCGCATCCAGAATCTTGTATCGTCGCCGATTGCTGTGTTATGGCCGACAATTGATGGCTCACTGGGGCTGTCGGAGGAAGAATCGGTG
AGCTATGCCCGCAGATTCTATAAATTTGGATTTGCATTGCTTCCATTTCTTTGGGCGGTTAATTGCTTCTACTTCTGGCCTGTTCTTAGCTCTCACTCATTTCCTCGCAT
TCGTCCCTATATTGTTGGCTCAGCTATTGGTTTTGCTGTTTTCATGGCCATTATCTCGTCTTGGGCCTTGACATTTGCCATTGGAGGTGAACGCCTCTTTGGACCTGTTT
GGGATAAACTAGTGATGTACAACCTTGCTGACAAATTAGGATTAACAGGTTGGAGCTAGTCTGGTTCCATTCCTTCAGCAACCAACTTCGACCTTGTTCTTGTATATTTT
AAGATGTGTAACTCTCTACTGTCATTCTTTTCTTGAAATATCTAAGTTGAAGCTTTTGGTTTCACTTCTCTGTGCTTCAAGTGTCAAACATAAACATAGAAGGGATCTCA
TATCAAACATCATTGAAATGAAAAATATC
Protein sequenceShow/hide protein sequence
MENSQNSNSNPNPNPIRIQNLVSSPIAVLWPTIDGSLGLSEEESVSYARRFYKFGFALLPFLWAVNCFYFWPVLSSHSFPRIRPYIVGSAIGFAVFMAIISSWALTFAIG
GERLFGPVWDKLVMYNLADKLGLTGWS