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Carg24317 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24317
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCoiled-coil domain-containing protein 18, putative isoform 2
Genome locationCarg_Chr20:10017129..10018795
RNA-Seq ExpressionCarg24317
SyntenyCarg24317
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6571348.1 hypothetical protein SDJN03_30263, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4197.8Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        MGRMDRKSSIE EPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEA ECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

XP_008460897.1 PREDICTED: uncharacterized protein LOC103499638 [Cucumis melo]2.3e-3077.17Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF
        MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DED +SIM+NW+H++E DEL P  QLRDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF

XP_011649401.1 uncharacterized protein LOC105434623 [Cucumis sativus]7.5e-2972.83Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF
        MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+ VECKAI ++ +SI++NW+H++E DE L P YQLRDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF

XP_023512402.1 uncharacterized protein LOC111777167 [Cucurbita pepo subsp. pepo]2.7e-42100Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

XP_038902606.1 uncharacterized protein LOC120089256 [Benincasa hispida]4.9e-2874.73Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        MG +DRKSSIE EPRTL+M+QIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI+D+D SIM N++HE+E DEL  LYQ RDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

TrEMBL top hitse value%identityAlignment
A0A0A0LQ89 Uncharacterized protein3.6e-2972.83Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF
        MG +DRKSSIE EPRTLKM+QIQFAREAALYVMNT ++EEA+KIFTEGL+ VECKAI ++ +SI++NW+H++E DE L P YQLRDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADE-LPPLYQLRDIVTAPF

A0A1S3CDH2 uncharacterized protein LOC1034996381.1e-3077.17Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF
        MG +DRKSSIE EPRTLKMNQIQFAREAALYV+NTT++EEA+KIFTEGL+ VECKAI DED +SIM+NW+H++E DEL P  QLRDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF

A0A438HR46 Uncharacterized protein1.9e-1457.95Show/hide
Query:  MDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        M+R++SIETEP TL +NQ+QFAREAALYVMNT SMEEA+ IFTEGLE V     R+ D  +      ++EA  L P    RDIV+APF
Subjt:  MDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

A0A6J1DBC1 uncharacterized protein LOC1110189152.1e-2465.22Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF
        MGR+DRKSSIE EPRTLKM+QIQFAREAALY++NTT+++EA++IFTEGLE VECKA RD +     +  ++E+E  +L PLY+ RDIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDED-ESIMENWFHEQEADELPPLYQLRDIVTAPF

A0A6J1G887 uncharacterized protein LOC1114516484.4e-2773.63Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        M R+DRKSSIE EPRTLKM+QIQFAREAALYV+NT+S+EEA++IFTEGLEAVECK I D D S M+N  HE+E DELP  Y+L DIV+APF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G33467.1 unknown protein1.7e-1042.57Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT-----EGLEAVE-----CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAP
        M  ++R+SSIETEP TL ++Q++ ARE ALYVM T +MEEA+ IFT     EGL A E     C  ++DE++   ++ + ++    + P     DI TAP
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT-----EGLEAVE-----CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAP

Query:  F
        F
Subjt:  F

AT4G33467.2 unknown protein1.3e-1043Show/hide
Query:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT----EGLEAVE-----CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF
        M  ++R+SSIETEP TL ++Q++ ARE ALYVM T +MEEA+ IFT    EGL A E     C  ++DE++   ++ + ++    + P     DI TAPF
Subjt:  MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFT----EGLEAVE-----CKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAG
CATGGAAGAAGCAATCAAGATCTTCACGGAGGGATTAGAAGCAGTGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAG
CTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGAATGGATAGGAAATCATCCATTGAAACAGAGCCCAGGACTCTCAAAATGAACCAAATCCAATTTGCAAGAGAAGCAGCGCTGTACGTGATGAACACAACTAG
CATGGAAGAAGCAATCAAGATCTTCACGGAGGGATTAGAAGCAGTGGAATGCAAAGCAATACGAGATGAAGATGAATCCATAATGGAGAATTGGTTCCATGAACAAGAAG
CTGATGAGCTTCCACCTCTTTATCAGCTTAGAGACATTGTCACTGCCCCTTTTTAG
Protein sequenceShow/hide protein sequence
MGRMDRKSSIETEPRTLKMNQIQFAREAALYVMNTTSMEEAIKIFTEGLEAVECKAIRDEDESIMENWFHEQEADELPPLYQLRDIVTAPF