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Carg24334 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24334
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionthylakoid membrane protein TERC, chloroplastic
Genome locationCarg_Chr07:5253877..5255415
RNA-Seq ExpressionCarg24334
SyntenyCarg24334
Gene Ontology termsGO:0010027 - thylakoid membrane organization (biological process)
GO:0090351 - seedling development (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR022369 - Integral membrane protein TerC, riboswitch-linked


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595280.1 Thylakoid membrane protein TERC, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.2e-7597.44Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASI+HHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

KAG7027292.1 Thylakoid membrane protein TERC, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]3.0e-81100Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQVLTFCKAVDN
        AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQVLTFCKAVDN
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQVLTFCKAVDN

XP_022962994.1 thylakoid membrane protein TERC, chloroplastic [Cucurbita moschata]3.2e-7598.08Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

XP_022972632.1 thylakoid membrane protein TERC, chloroplastic [Cucurbita maxima]2.7e-7496.15Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASI+HHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRR SRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFG+GVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

XP_023517698.1 thylakoid membrane protein TERC, chloroplastic [Cucurbita pepo subsp. pepo]1.6e-7496.79Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASI+HHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFGVGVGLKDG GKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

TrEMBL top hitse value%identityAlignment
A0A0A0L220 Uncharacterized protein5.3e-6077.91Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKA-------EGTESKVSSIRNVA
        MASIIH+GLQISSK+DSPW ++SS LHFHPR  VE VHN VPQFSPVI+NCR   RSL+R  SRIEREGDPSTAEA++        EG+ESKVSSIRNVA
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKA-------EGTESKVSSIRNVA

Query:  LCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        LCVA+A+AFG+GVGLKDG GKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVP EYQ  VLT+
Subjt:  LCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

A0A6J1CQ88 thylakoid membrane protein TERC, chloroplastic isoform X27.2e-5769.54Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKA------------------EGT
        MASIIH+ +QISSK DSPW ++SSQLHF PRT +E VHN +P+FSPV++NC R  RSLIR GSRIE+EGDPSTAEA+++                  EG 
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKA------------------EGT

Query:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        ESKVSS+RNVALCVA+A+AFG+G+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

A0A6J1CRT5 thylakoid membrane protein TERC, chloroplastic isoform X35.5e-5776.28Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASIIH+ +QISSK DSPW ++SSQLHF PRT +E VHN +P+FSPV++NC R  RSLIR GSRIE+EGDPST  A   EG ESKVSS+RNVALCVA+A+
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFG+G+GLKDG GKASEF+AGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

A0A6J1HIN0 thylakoid membrane protein TERC, chloroplastic1.5e-7598.08Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

A0A6J1I5C9 thylakoid membrane protein TERC, chloroplastic1.3e-7496.15Show/hide
Query:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
        MASI+HHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRR SRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL
Subjt:  MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASAL

Query:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        AFG+GVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ  VLT+
Subjt:  AFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

SwissProt top hitse value%identityAlignment
F4JZG9 Thylakoid membrane protein TERC, chloroplastic9.5e-2271.62Show/hide
Query:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        E+  +S + VALCV +A+AFG+G+GLK+G GKASEFFAGY+LEQSLSVDNLFVFVL+FKYFKVP+ YQ  VLT+
Subjt:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF

P96554 Uncharacterized membrane protein STKORF3191.3e-0753.45Show/hide
Query:  ALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ
        AL V+ AL FG GV  K G     +F  GYL+E+SLSVDN+FVFV+IF   ++P  YQ
Subjt:  ALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ

Q1RKF1 Uncharacterized membrane protein RBE_00824.0e-0438.78Show/hide
Query:  FGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ
        FG+ +    GA    E++  +L+E+++S+DN+FV  +IF++FK+P +YQ
Subjt:  FGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ

Q52356 Tellurium resistance protein TerC4.0e-0443.06Show/hide
Query:  ESKVSSIRNVAL----CVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ
        + K  S+++ AL     V  A+AF   + +  GA  AS F  GY LE+ LSVDNLFV + IF +F VP  Y+
Subjt:  ESKVSSIRNVAL----CVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ

Q92GA4 Uncharacterized membrane protein RC12194.7e-0542.31Show/hide
Query:  ALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ
        A  FG+ V    GA  A E++  +L+E+++S+DN+FV  +IF++FK+P +YQ
Subjt:  ALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ

Arabidopsis top hitse value%identityAlignment
AT5G12130.1 integral membrane TerC family protein6.7e-2371.62Show/hide
Query:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF
        E+  +S + VALCV +A+AFG+G+GLK+G GKASEFFAGY+LEQSLSVDNLFVFVL+FKYFKVP+ YQ  VLT+
Subjt:  ESKVSSIRNVALCVASALAFGVGVGLKDGAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQ--VLTF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATCATCCACCATGGTCTTCAAATTTCTTCCAAGATCGATTCTCCATGGCTCAGGCTTTCATCGCAGCTTCATTTTCATCCTCGGACATCGGTTGAGATTGT
CCATAATCGCGTTCCTCAATTCTCCCCAGTTATCATTAATTGCCGTCGTGGTTCGCGCTCTCTGATTCGACGCGGCAGTCGAATCGAGAGGGAAGGTGATCCATCTACTG
CAGAAGCCGATAAGGCCGAGGGGACCGAAAGTAAAGTTTCTTCAATTAGGAATGTTGCTTTATGTGTTGCTAGTGCACTGGCATTTGGCGTCGGGGTGGGCTTGAAAGAT
GGAGCGGGCAAGGCATCTGAATTTTTCGCTGGGTATCTTCTGGAGCAAAGTTTGTCAGTTGACAATCTTTTTGTTTTTGTTTTGATTTTCAAGTACTTCAAAGTGCCAAT
CGAGTATCAGGTGCTAACTTTCTGCAAAGCTGTCGATAATTAA
mRNA sequenceShow/hide mRNA sequence
TCCGAAAAACAATGGATAAGATTCGTTAAGCCTCAGTCTCTGGTGTTCGAAGCGGTGGAAATGGCTTCAATCATCCACCATGGTCTTCAAATTTCTTCCAAGATCGATTC
TCCATGGCTCAGGCTTTCATCGCAGCTTCATTTTCATCCTCGGACATCGGTTGAGATTGTCCATAATCGCGTTCCTCAATTCTCCCCAGTTATCATTAATTGCCGTCGTG
GTTCGCGCTCTCTGATTCGACGCGGCAGTCGAATCGAGAGGGAAGGTGATCCATCTACTGCAGAAGCCGATAAGGCCGAGGGGACCGAAAGTAAAGTTTCTTCAATTAGG
AATGTTGCTTTATGTGTTGCTAGTGCACTGGCATTTGGCGTCGGGGTGGGCTTGAAAGATGGAGCGGGCAAGGCATCTGAATTTTTCGCTGGGTATCTTCTGGAGCAAAG
TTTGTCAGTTGACAATCTTTTTGTTTTTGTTTTGATTTTCAAGTACTTCAAAGTGCCAATCGAGTATCAGGTGCTAACTTTCTGCAAAGCTGTCGATAATTAA
Protein sequenceShow/hide protein sequence
MASIIHHGLQISSKIDSPWLRLSSQLHFHPRTSVEIVHNRVPQFSPVIINCRRGSRSLIRRGSRIEREGDPSTAEADKAEGTESKVSSIRNVALCVASALAFGVGVGLKD
GAGKASEFFAGYLLEQSLSVDNLFVFVLIFKYFKVPIEYQVLTFCKAVDN