; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24357 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24357
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlycine rich RNA binding protein
Genome locationCarg_Chr07:5420326..5422871
RNA-Seq ExpressionCarg24357
SyntenyCarg24357
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143719.1 organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]1.8e-6491.16Show/hide
Query:  MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

XP_022962832.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita moschata]1.4e-74100Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

XP_022972736.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]5.1e-7298.63Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPR-PPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPR PPPPQPQSAETSEFGIRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPR-PPPPQPQSAETSEFGIRTNKTIGWCG

XP_023517167.1 organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo]2.1e-7399.31Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

XP_031739912.1 organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus]4.3e-6389.19Show/hide
Query:  MAFFSTVRRVLNG---SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG
        MAFFSTVRRVLNG   SSSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE 
Subjt:  MAFFSTVRRVLNG---SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG

Query:  MNAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        MNAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  MNAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

TrEMBL top hitse value%identityAlignment
A0A1S3BHV3 glycine-rich RNA-binding protein 4, mitochondrial1.4e-6288.44Show/hide
Query:  MAFFSTVRRVLNGS--SSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM
        MAFFSTVRRVL+GS  SSSSS+LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF+SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ M
Subjt:  MAFFSTVRRVLNGS--SSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

A0A2I4DKH7 organelle RRM domain-containing protein 2, mitochondrial7.2e-5677.24Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAF S++RR+L+GSS++SS+L SQ+   RL++TLTSPKLFISGLSRLTTDEKL+EAF+ FGQL++AKVI DRATGRSKGFGFVTY +IEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPP   Q  E+S+ G RTNKT+GWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

A0A6J1CQ59 organelle RRM domain-containing protein 2, mitochondrial8.5e-6591.16Show/hide
Query:  MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM
        MAF S+VRRVLNGSSSS  SS+L+SQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGM
Subjt:  MAFFSTVRRVLNGSSSS--SSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGM

Query:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        NAKFLDGWVIFVDPAKPREPR PPPQPQS ETSEFGIRTNKTIGWCG
Subjt:  NAKFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

A0A6J1HDN1 organelle RRM domain-containing protein 2, mitochondrial7.0e-75100Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG

A0A6J1I6S8 organelle RRM domain-containing protein 2, mitochondrial2.5e-7298.63Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAFFSTVRRVLNGSSSSSSVLRSQWT FRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPR-PPPPQPQSAETSEFGIRTNKTIGWCG
        KFLDGWVIFVDPAKPREPR PPPPQPQSAETSEFGIRTNKTIGWCG
Subjt:  KFLDGWVIFVDPAKPREPR-PPPPQPQSAETSEFGIRTNKTIGWCG

SwissProt top hitse value%identityAlignment
Q99070 Glycine-rich RNA-binding protein 26.0e-1550.63Show/hide
Query:  KLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR
        + F+ GL+  T +E L++AF +FGQ++++KVITDR TGRS+GFGFVT+S+ +    A E MN K LDG  I V+ A+ R
Subjt:  KLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR

Q9FFZ6 Small RNA-binding protein 11, chloroplastic1.1e-1645.54Show/hide
Query:  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR
        S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA    N + L+G  IFVD AK +
Subjt:  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR

Query:  E
        +
Subjt:  E

Q9FIU6 Organelle RRM domain-containing protein 2, mitochondrial1.5e-2155.43Show/hide
Query:  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS
        S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K   GM+ KFLDGWVIF + A+PRE +    QPQ+
Subjt:  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS

Q9FX45 Organelle RRM domain-containing protein 6, chloroplastic1.9e-1642.06Show/hide
Query:  RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWV
        RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG V
Subjt:  RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWV

Query:  IFVDPAKPR------EPRPPPPQPQS
        IFV+ AK R      +PR   P+PQS
Subjt:  IFVDPAKPR------EPRPPPPQPQS

Q9FZ84 Glycine-rich RNA-binding protein 6, mitochondrial2.7e-1553.09Show/hide
Query:  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPA
        +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A  A + M  K LDG +I V PA
Subjt:  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPA

Arabidopsis top hitse value%identityAlignment
AT1G18630.1 glycine-rich RNA-binding protein 61.9e-1653.09Show/hide
Query:  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPA
        +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A  A + M  K LDG +I V PA
Subjt:  TLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPA

AT1G73530.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-1742.06Show/hide
Query:  RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWV
        RR + G   SS +     +    SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EEA KA +GM+ KFLDG V
Subjt:  RRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWV

Query:  IFVDPAKPR------EPRPPPPQPQS
        IFV+ AK R      +PR   P+PQS
Subjt:  IFVDPAKPR------EPRPPPPQPQS

AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein2.2e-4969.44Show/hide
Query:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA
        MAF S+ RR++ G   SSS+L S   C R  STLTSP+LF+SGLSRLTT+EKLQ+AF SFGQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNA
Subjt:  MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNA

Query:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWC
        KFLDGWVIFVDPA+PREPR P  Q     +SE G  TNKTIGWC
Subjt:  KFLDGWVIFVDPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWC

AT5G06210.1 RNA binding (RRM/RBD/RNP motifs) family protein7.7e-1845.54Show/hide
Query:  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR
        S  ++ S  +CF       + KLFI GLS  TT++ L EAF+  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA    N + L+G  IFVD AK +
Subjt:  SSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPR

Query:  E
        +
Subjt:  E

AT5G54580.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.0e-2255.43Show/hide
Query:  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS
        S  LF+SGLS+ TT E L+ AF  FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K   GM+ KFLDGWVIF + A+PRE +    QPQ+
Subjt:  SPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPPQPQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAATGGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCC
TAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAACAGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAA
CGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACAGTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTT
GATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCTCCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGA
mRNA sequenceShow/hide mRNA sequence
AAAAACCCTAACCCCTGAATATCATCTCTGTTGTAGTGTGGTTATTCTCTCTTCCCATCGGCCGATCAAATCAGATGGCTTTCTTCTCCACTGTGAGGCGCGTTCTTAAT
GGATCTTCCTCTTCTTCTTCCGTTCTTCGATCACAGTGGACTTGTTTTCGTCTCAGCTCAACTCTCACATCGCCTAAGCTCTTCATCAGTGGTCTTTCAAGATTAACAAC
AGACGAGAAGCTCCAGGAAGCCTTTACTTCCTTCGGTCAGCTTGTAGAAGCGAAAGTTATAACCGATAGGGCAACGGGAAGATCAAAGGGGTTCGGGTTTGTAACGTACA
GTACAATAGAAGAGGCTGAGAAAGCAAGAGAAGGAATGAACGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCGCCTCCT
CCACAGCCTCAATCTGCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGTTGATTGATTGATTGCCTGCAAAATCTATATGAAACTTCATA
TGATTTTGGTCATTTTTTCATATTGTTCATCATCCATGGGTAGTGTAGTATAGATAAGTTTCATGAGACAATACCTTAGGAGCCTGAAAAGGGTAAAATTTTGTTATATG
TATGGATTCAGAAAGAGGGGAAAGGAGCTTTTCATTAAATTTAAACATATTTAATTATTA
Protein sequenceShow/hide protein sequence
MAFFSTVRRVLNGSSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFV
DPAKPREPRPPPPQPQSAETSEFGIRTNKTIGWCG