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Carg24373 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24373
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein ROOT HAIR DEFECTIVE 3 homolog
Genome locationCarg_Chr08:4195487..4197282
RNA-Seq ExpressionCarg24373
SyntenyCarg24373
Gene Ontology termsGO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003924 - GTPase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR008803 - RHD3/Sey1
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR030386 - GB1/RHD3-type guanine nucleotide-binding (G) domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593517.1 Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.9e-55100Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

KAG7025862.1 Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-55100Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

XP_022964501.1 protein ROOT HAIR DEFECTIVE 3 homolog 1-like isoform X2 [Cucurbita moschata]1.9e-55100Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

XP_023000318.1 protein ROOT HAIR DEFECTIVE 3 homolog 1-like isoform X2 [Cucurbita maxima]5.5e-5599.07Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDG FNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

XP_023515171.1 protein ROOT HAIR DEFECTIVE 3 homolog 1-like isoform X2 [Cucurbita pepo subsp. pepo]1.9e-55100Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

TrEMBL top hitse value%identityAlignment
A0A6J1HJ25 Protein ROOT HAIR DEFECTIVE 3 homolog9.2e-56100Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

A0A6J1HND9 Protein ROOT HAIR DEFECTIVE 3 homolog1.0e-5499.07Show/hide
Query:  AKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT
        +KSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT
Subjt:  AKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT

Query:  DGRERGE
        DGRERGE
Subjt:  DGRERGE

A0A6J1KDB3 Protein ROOT HAIR DEFECTIVE 3 homolog3.0e-5498.13Show/hide
Query:  AKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT
        +KSDECCSVQLIDGDG FNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT
Subjt:  AKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGT

Query:  DGRERGE
        DGRERGE
Subjt:  DGRERGE

A0A6J1KMA1 Protein ROOT HAIR DEFECTIVE 3 homolog2.7e-5599.07Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDECCSVQLIDGDG FNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

E5GCA9 Protein SEY11.5e-5093.52Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        MAKSDE CSVQLIDGDG FNVDGIDNFIK VKLGECGLSYAVVSIMGPQSSGKSTLLNNLF TNF+EM+AF GRSQTTKGIWLARCAGIEPCTLVMDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

SwissProt top hitse value%identityAlignment
P93042 Protein ROOT HAIR DEFECTIVE 33.4e-4785.58Show/hide
Query:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR
        D  CS QLIDGDGVFNV G+D+FIK VKL ECGLSYAVVSIMGPQSSGKSTLLN+LF TNF+EM+AF GRSQTTKGIW+ARCAGIEPCT+VMDLEGTDGR
Subjt:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR

Query:  ERGE
        ERGE
Subjt:  ERGE

Q0JLS6 Protein ROOT HAIR DEFECTIVE 31.2e-4481.73Show/hide
Query:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR
        D C S QLIDGDGVFNV G++NF+K VK+GECGLSYAVVSIMGPQSSGKSTLLN+LF TNF+EM+AF GRSQTTKGIW+A+   IEPCTLVMDLEGTDGR
Subjt:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR

Query:  ERGE
        ERGE
Subjt:  ERGE

Q2QMH2 Protein ROOT HAIR DEFECTIVE 3 homolog 12.9e-3874Show/hide
Query:  SVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE
        +VQLIDG+G F  D  + F+    +  CGLSYAVVSIMGPQSSGKSTLLN LF TNF+EM+AF GRSQTTKGIW+ARC G+EPCT+VMDLEGTDGRERGE
Subjt:  SVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE

Q9FKE9 Protein ROOT HAIR DEFECTIVE 3 homolog 21.3e-4375Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        M ++D+ CS QLIDG+G FNV G+DNF+K  KL +CGLSYAVV+IMGPQSSGKSTLLN+LF T+F+EM+AF GRSQTTKGIW+ARC GIEP T+ MDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE

Q9SSN0 Protein ROOT HAIR DEFECTIVE 3 homolog 15.2e-4885.85Show/hide
Query:  KSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTD
        KS+ CCSVQLIDGDG++NV  ID+FIK VKL +CGLSYAVVSIMGPQSSGKSTLLN+LF TNF EM+AF GRSQTTKGIWLARCAGIEPCTLVMDLEGTD
Subjt:  KSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTD

Query:  GRERGE
        GRERGE
Subjt:  GRERGE

Arabidopsis top hitse value%identityAlignment
AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3)3.7e-4985.85Show/hide
Query:  KSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTD
        KS+ CCSVQLIDGDG++NV  ID+FIK VKL +CGLSYAVVSIMGPQSSGKSTLLN+LF TNF EM+AF GRSQTTKGIWLARCAGIEPCTLVMDLEGTD
Subjt:  KSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTD

Query:  GRERGE
        GRERGE
Subjt:  GRERGE

AT3G13870.1 Root hair defective 3 GTP-binding protein (RHD3)2.4e-4885.58Show/hide
Query:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR
        D  CS QLIDGDGVFNV G+D+FIK VKL ECGLSYAVVSIMGPQSSGKSTLLN+LF TNF+EM+AF GRSQTTKGIW+ARCAGIEPCT+VMDLEGTDGR
Subjt:  DECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGR

Query:  ERGE
        ERGE
Subjt:  ERGE

AT3G13870.2 Root hair defective 3 GTP-binding protein (RHD3)7.8e-1591.67Show/hide
Query:  GRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE
        G SQTTKGIW+ARCAGIEPCT+VMDLEGTDGRERGE
Subjt:  GRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE

AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3)9.4e-4575Show/hide
Query:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG
        M ++D+ CS QLIDG+G FNV G+DNF+K  KL +CGLSYAVV+IMGPQSSGKSTLLN+LF T+F+EM+AF GRSQTTKGIW+ARC GIEP T+ MDLEG
Subjt:  MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEG

Query:  TDGRERGE
        TDGRERGE
Subjt:  TDGRERGE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAAGAGCGATGAATGTTGCTCTGTTCAGCTTATAGATGGAGATGGTGTATTCAACGTCGACGGAATCGACAACTTTATCAAATTTGTGAAATTGGGGGAATGTGG
ACTTTCATATGCTGTAGTATCCATTATGGGCCCTCAAAGTAGTGGGAAGAGTACGCTGCTAAATAATCTGTTTGCGACCAACTTTAAAGAGATGAATGCTTTTATAGGGA
GGTCTCAAACAACTAAAGGTATATGGTTGGCAAGATGTGCTGGCATTGAGCCTTGTACGCTTGTAATGGATTTGGAGGGAACTGATGGAAGAGAGCGAGGAGAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAAGAGCGATGAATGTTGCTCTGTTCAGCTTATAGATGGAGATGGTGTATTCAACGTCGACGGAATCGACAACTTTATCAAATTTGTGAAATTGGGGGAATGTGG
ACTTTCATATGCTGTAGTATCCATTATGGGCCCTCAAAGTAGTGGGAAGAGTACGCTGCTAAATAATCTGTTTGCGACCAACTTTAAAGAGATGAATGCTTTTATAGGGA
GGTCTCAAACAACTAAAGGTATATGGTTGGCAAGATGTGCTGGCATTGAGCCTTGTACGCTTGTAATGGATTTGGAGGGAACTGATGGAAGAGAGCGAGGAGAG
Protein sequenceShow/hide protein sequence
MAKSDECCSVQLIDGDGVFNVDGIDNFIKFVKLGECGLSYAVVSIMGPQSSGKSTLLNNLFATNFKEMNAFIGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE