; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24385 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24385
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationCarg_Chr13:4387177..4388027
RNA-Seq ExpressionCarg24385
SyntenyCarg24385
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019333.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-31100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKIEDPFDSLWLALF
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKIEDPFDSLWLALF
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKIEDPFDSLWLALF
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]3.6e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]3.6e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_022973172.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita maxima]3.6e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]3.6e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
TrEMBL top hitse value%identityAlignment
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 114.3e-2296.49Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A5D3C2G2 Mediator of RNA polymerase II transcription subunit 114.3e-2296.49Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 111.8e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 111.8e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 111.8e-23100Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 111.3e-2080.7Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein9.5e-2280.7Show/hide
Query:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK
        MDP TQNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +K
Subjt:  MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGATAGAGGATCCATTTGATAGCCTCTGGCTTGCCCTCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCGCTGACCCAGAATACTTCGTTGCAACGCCTTCAAAATGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTTGCGGGGGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGCAGTGAGTTCATGCAATTCATCAAGATAGAGGATCCATTTGATAGCCTCTGGCTTGCCCTCTTTTGA
Protein sequenceShow/hide protein sequence
MDPLTQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKIEDPFDSLWLALF