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Carg24386 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24386
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationCarg_Chr13:4372339..4374813
RNA-Seq ExpressionCarg24386
SyntenyCarg24386
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019332.1 Mediator of RNA polymerase II transcription subunit 11, partial [Cucurbita argyrosperma subsp. argyrosperma]6.5e-107100Show/hide
Query:  MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRTVVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSE
        MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRTVVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSE
Subjt:  MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRTVVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSE

Query:  VQIKFYYKKCSPPFLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYISRVVTLMTSFIDL
        VQIKFYYKKCSPPFLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYISRVVTLMTSFIDL
Subjt:  VQIKFYYKKCSPPFLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYISRVVTLMTSFIDL
XP_022142440.1 mediator of RNA polymerase II transcription subunit 11 [Momordica charantia]7.6e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
XP_022927635.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita moschata]7.6e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]7.6e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
XP_023520390.1 mediator of RNA polymerase II transcription subunit 11 isoform X1 [Cucurbita pepo subsp. pepo]7.6e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 113.7e-2396.43Show/hide
Query:  LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SKLDGMKQTID+YQ
Subjt:  LDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 118.2e-2398.18Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTID+YQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 113.7e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
A0A6J1EPI6 Mediator of RNA polymerase II transcription subunit 113.7e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 113.7e-23100Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
        DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQ
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 113.8e-1770.37Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
        DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein2.7e-1870.37Show/hide
Query:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY
        DIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++L+ +KQT D Y
Subjt:  DIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAATTGTTCACATGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTTGGGGTTGTTGCAGAGGCCACTTGGAGTGTTGGCAATAGAGAGAGTGGAGTC
AGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATTTGGTAGTTGGTTGTCGCACGGTGGTCAATGGTTGGGGTTGTCACAGTGACCTGGGTTTTT
GCGTGGTCACATGGAACCTTAGGACTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGTCCGATCAGAAGTTCAAATAAAGTTTTACTACAAAAAGTGC
TCTCCCCCGTTTCTGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACT
TTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCG
TGACTTTAATGACTAGCTTCATCGACCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAATTGTTCACATGGGACTCTGTTGGTTGGAAGTTGATTATTCCACTGCGGTTGGGGTTGTTGCAGAGGCCACTTGGAGTGTTGGCAATAGAGAGAGTGGAGTC
AGGAAAACAACTTGAAAAGCTGCTAAGACTTGTCGGAAACTTTGTTCATTTGGTAGTTGGTTGTCGCACGGTGGTCAATGGTTGGGGTTGTCACAGTGACCTGGGTTTTT
GCGTGGTCACATGGAACCTTAGGACTTTCGCATTTGCTTTAGCAACATGGTTTCTCTTTGATCGGGAAGTCCGATCAGAAGTTCAAATAAAGTTTTACTACAAAAAGTGC
TCTCCCCCGTTTCTGGATATCCAAGTTACGTTGCGGGATGAAATCAAAAGTGCGTGTGAATATCGTCCATTCGAGAAGTGTGATTATAGTTCAAGGATTACTAATGAACT
TTGCTGCAAGAAACTGGAATACATGATTTCGAAGTTGGATGGAATGAAGCAAACCATTGATGAATATCAAGCCTTATCTTTGTCACATACTATATACATCTCTCGTGTCG
TGACTTTAATGACTAGCTTCATCGACCTATGA
Protein sequenceShow/hide protein sequence
MEELFTWDSVGWKLIIPLRLGLLQRPLGVLAIERVESGKQLEKLLRLVGNFVHLVVGCRTVVNGWGCHSDLGFCVVTWNLRTFAFALATWFLFDREVRSEVQIKFYYKKC
SPPFLDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDEYQALSLSHTIYISRVVTLMTSFIDL