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Carg24454 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24454
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionselenoprotein K
Genome locationCarg_Chr04:18319548..18322328
RNA-Seq ExpressionCarg24454
SyntenyCarg24454
Gene Ontology termsGO:0006816 - calcium ion transport (biological process)
GO:0032469 - endoplasmic reticulum calcium ion homeostasis (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR024491 - Selenoprotein SelK/SelG


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032786.1 Selenoprotein K, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-106100Show/hide
Query:  MAYVERGSLLVSNLLFFDSASESLVDDFRIWKHFRVFLLLSGELSHIKSWGMFMFPKHKLILNLPVLNSSVRIPIALCYLSPGVVKSQRSFWRLKTITDF
        MAYVERGSLLVSNLLFFDSASESLVDDFRIWKHFRVFLLLSGELSHIKSWGMFMFPKHKLILNLPVLNSSVRIPIALCYLSPGVVKSQRSFWRLKTITDF
Subjt:  MAYVERGSLLVSNLLFFDSASESLVDDFRIWKHFRVFLLLSGELSHIKSWGMFMFPKHKLILNLPVLNSSVRIPIALCYLSPGVVKSQRSFWRLKTITDF

Query:  FWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYLPVARAAAKLLAASMVHLHKGVYKILFNLKSWAVL
        FWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYLPVARAAAKLLAASMVHLHKGVYKILFNLKSWAVL
Subjt:  FWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYLPVARAAAKLLAASMVHLHKGVYKILFNLKSWAVL
XP_004140863.1 selenoprotein K isoform X1 [Cucumis sativus]2.8e-3691.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
XP_008445670.1 PREDICTED: selenoprotein K [Cucumis melo]2.8e-3691.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
XP_022964558.1 selenoprotein K-like [Cucurbita moschata]2.1e-3692.94Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
XP_022993311.1 selenoprotein K-like [Cucurbita maxima]1.1e-3591.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPR LDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
TrEMBL top hitse value%identityAlignment
A0A0A0KDW6 Uncharacterized protein1.3e-3691.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVN+IGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
A0A1S3BE45 selenoprotein K1.3e-3691.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAI+NIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
A0A6J1HI52 selenoprotein K-like1.0e-3692.94Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
A0A6J1JQF6 selenoprotein K1.0e-3692.94Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
A0A6J1JVZ4 selenoprotein K-like5.1e-3691.76Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
        + Y+  GVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSE+YRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPR LDNV
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNV
SwissProt top hitse value%identityAlignment
Q4R8M1 Selenoprotein K1.7e-0433.33Show/hide
Query:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
        + Y+S G V   RS   WRL  ITDFFW I   + +FF TL   +  +    G+ S  ++D G           G P  PPR +  +++L
Subjt:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
Q6S9C4 Selenoprotein K3.8e-0436.96Show/hide
Query:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLF--SMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
        + Y+S G V   RS   WRL  ITDFFW I   + +FF TL    ++K   YR  S S +  DG GP           P  PPR +  + +L
Subjt:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLF--SMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
Q9Y6D0 Selenoprotein K1.7e-0433.33Show/hide
Query:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
        + Y+S G V   RS   WRL  ITDFFW I   + +FF TL   +  +    G+ S  ++D G           G P  PPR +  +++L
Subjt:  LCYLSPGVVKSQRSF--WRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYL
Arabidopsis top hitse value%identityAlignment
AT4G08230.1 glycine-rich protein6.6e-2056Show/hide
Query:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVHYLPVARAA
        + Y+  GVVK++R  WRL+TI DFF +I+N+I VFF T+FSMEKS++YRKGS   KKW      GGG GG   G  GGR  GPPR GLDNV  L   R A
Subjt:  LCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGVFFTTLFSMEKSESYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVHYLPVARAA
AT4G08230.2 glycine-rich protein6.0e-0555.93Show/hide
Query:  MEKSESYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVHYLPVARAA
        MEKS++YRKGS   KKW      GGG GG   G  GGR  GPPR GLDNV  L   R A
Subjt:  MEKSESYRKGSGSGKKW-----DGGGPGGPGSGPYGGRPRGPPR-GLDNVHYLPVARAA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTACGTTGAACGAGGTTCTCTCTTGGTTTCTAATCTGTTATTTTTCGATTCCGCTTCTGAGAGTTTGGTTGATGACTTTCGGATTTGGAAACATTTTAGAGTTTT
TTTGCTTCTTTCTGGTGAACTCTCTCATATTAAGTCATGGGGGATGTTCATGTTTCCGAAGCATAAATTGATACTAAATTTGCCAGTATTAAACAGCTCTGTGCGAATCC
CTATTGCACTCTGCTACCTGTCTCCTGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTG
TTTTTTACAACCTTATTCTCGATGGAAAAATCTGAGTCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTA
TGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCACTACCTGCCTGTGGCTCGTGCTGCGGCTAAGCTTTTGGCTGCTTCCATGGTGCATTTACACAAGG
GTGTCTACAAAATACTCTTCAATTTAAAATCGTGGGCCGTGTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTACGTTGAACGAGGTTCTCTCTTGGTTTCTAATCTGTTATTTTTCGATTCCGCTTCTGAGAGTTTGGTTGATGACTTTCGGATTTGGAAACATTTTAGAGTTTT
TTTGCTTCTTTCTGGTGAACTCTCTCATATTAAGTCATGGGGGATGTTCATGTTTCCGAAGCATAAATTGATACTAAATTTGCCAGTATTAAACAGCTCTGTGCGAATCC
CTATTGCACTCTGCTACCTGTCTCCTGGCGTTGTGAAATCCCAGAGATCATTTTGGCGTCTCAAAACCATAACTGATTTCTTTTGGGCCATTGTAAACATTATCGGTGTG
TTTTTTACAACCTTATTCTCGATGGAAAAATCTGAGTCTTATAGAAAAGGATCTGGTTCTGGCAAGAAATGGGACGGTGGTGGCCCAGGAGGTCCCGGGTCAGGGCCTTA
TGGTGGTCGTCCACGTGGGCCACCTCGTGGTCTAGACAACGTTCACTACCTGCCTGTGGCTCGTGCTGCGGCTAAGCTTTTGGCTGCTTCCATGGTGCATTTACACAAGG
GTGTCTACAAAATACTCTTCAATTTAAAATCGTGGGCCGTGTTGTAAATGTTGATGGAATGCTATCTGCGAATATAAATTAGTTCATTAGATAAAATAAAAAAAAGGGTT
CTCACTGATGTGGTTTCATAAATTAGTACTCAAAGTTAATTTTGCCAATCAAAATGTGTAGTGTTTGGATAAAATTTTAAGATGCCAAAGCATTTTT
Protein sequenceShow/hide protein sequence
MAYVERGSLLVSNLLFFDSASESLVDDFRIWKHFRVFLLLSGELSHIKSWGMFMFPKHKLILNLPVLNSSVRIPIALCYLSPGVVKSQRSFWRLKTITDFFWAIVNIIGV
FFTTLFSMEKSESYRKGSGSGKKWDGGGPGGPGSGPYGGRPRGPPRGLDNVHYLPVARAAAKLLAASMVHLHKGVYKILFNLKSWAVL