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Carg24460 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24460
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr04:18292605..18293087
RNA-Seq ExpressionCarg24460
SyntenyCarg24460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602075.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.1e-4976.39Show/hide
Query:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE
        MINV TGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRAR SLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNL H+    
Subjt:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE

Query:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLG
                       +  R+CA  R    FRRGNSLHAYLRK G
Subjt:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLG
KAG7032773.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-4672.22Show/hide
Query:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE
        MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRAR SLPHQNPPSAACPCYTTVIFLYTTRNFDNRT  + +            
Subjt:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE

Query:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLG
          PTFL+  + +   +  R+CA  R    FRRGNSLHAYLRK G
Subjt:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLG
KAG7032780.1 hypothetical protein SDJN02_06830, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-76100Show/hide
Query:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE
        MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE
Subjt:  MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAE

Query:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLGV
        ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLGV
Subjt:  ANPTFLIKTYEHACRRIRRNCATARKLELFRRGNSLHAYLRKLGV
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAATGTCTGTACTGGAGAGCTTGAATTGAAGCCGAAGTTGAAGAAGCAAGTGCAGAAAGCCATAAGAAACTCGCCTTTTGCAATATCAAACTCTGTTTCCTCTTC
CCTGCCGATTTCATACATTCTTAACATTGGCAACAGAGCTCGAATTTCTCTGCCCCATCAAAACCCACCTTCCGCCGCTTGTCCATGCTACACCACCGTCATATTCTTGT
ACACTACAAGAAACTTCGATAATCGTACAGTTCGAGCTCCTATGCAGATACCAAATTTAGCGCACAGTAACATAGCTGAAGCTAACCCCACATTTCTCATCAAGACGTAC
GAACATGCCTGCAGAAGGATACGAAGGAATTGCGCCACTGCGCGCAAGTTAGAGCTTTTCAGGCGAGGCAATTCCCTTCATGCTTATCTGAGGAAATTGGGTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCAATGTCTGTACTGGAGAGCTTGAATTGAAGCCGAAGTTGAAGAAGCAAGTGCAGAAAGCCATAAGAAACTCGCCTTTTGCAATATCAAACTCTGTTTCCTCTTC
CCTGCCGATTTCATACATTCTTAACATTGGCAACAGAGCTCGAATTTCTCTGCCCCATCAAAACCCACCTTCCGCCGCTTGTCCATGCTACACCACCGTCATATTCTTGT
ACACTACAAGAAACTTCGATAATCGTACAGTTCGAGCTCCTATGCAGATACCAAATTTAGCGCACAGTAACATAGCTGAAGCTAACCCCACATTTCTCATCAAGACGTAC
GAACATGCCTGCAGAAGGATACGAAGGAATTGCGCCACTGCGCGCAAGTTAGAGCTTTTCAGGCGAGGCAATTCCCTTCATGCTTATCTGAGGAAATTGGGTGTTTGA
Protein sequenceShow/hide protein sequence
MINVCTGELELKPKLKKQVQKAIRNSPFAISNSVSSSLPISYILNIGNRARISLPHQNPPSAACPCYTTVIFLYTTRNFDNRTVRAPMQIPNLAHSNIAEANPTFLIKTY
EHACRRIRRNCATARKLELFRRGNSLHAYLRKLGV