; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24478 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24478
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S26
Genome locationCarg_Chr04:562772..564820
RNA-Seq ExpressionCarg24478
SyntenyCarg24478
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0019430 - removal of superoxide radicals (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004784 - superoxide dismutase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000892 - Ribosomal protein S26e
IPR038551 - Ribosomal protein S26e superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]2.0e-70100Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]3.1e-6393.33Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        F+RRR+DQ K      PGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]6.0e-6797.78Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        FLRRRDDQPK   PGQPGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]4.0e-6393.33Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        F+RRRDDQPK      PGQPGQAPRP GAG PARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

XP_022996709.1 40S ribosomal protein S26-3-like [Cucurbita maxima]2.3e-6697.04Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        FLRRRDDQPK   PGQPGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

TrEMBL top hitse value%identityAlignment
A0A0A0KM45 40S ribosomal protein S261.5e-6393.33Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        F+RRR+DQ K      PGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

A0A1S3C5M1 40S ribosomal protein S261.5e-6393.33Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        F+RRR+DQ K      PGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

A0A5A7VIJ0 40S ribosomal protein S261.5e-6393.33Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        F+RRR+DQ K      PGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

A0A6J1FPQ0 40S ribosomal protein S262.9e-6797.78Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        FLRRRDDQPK   PGQPGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

A0A6J1K9H1 40S ribosomal protein S261.1e-6697.04Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCA HSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV
        FLRRRDDQPK   PGQPGQPGQAPRPVGAGNPARV
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPARV

SwissProt top hitse value%identityAlignment
O45499 40S ribosomal protein S268.8e-3764.29Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRP
        F +R           +PG PG  PRP
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRP

P49206 40S ribosomal protein S26-11.1e-5279.7Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      PGQPGQAPRP G G  A
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

P49216 40S ribosomal protein S265.9e-4974.44Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RRR+D+P+  +PG     G AP P GA  PA
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

Q8LPJ7 40S ribosomal protein S26-21.1e-5279.7Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      PGQPGQAPRP G G  A
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

Q9LYK9 40S ribosomal protein S26-33.3e-5280.45Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      P QPGQAPRP G G PA
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

Arabidopsis top hitse value%identityAlignment
AT2G40510.1 Ribosomal protein S26e family protein8.1e-5479.7Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      PGQPGQAPRP G G  A
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

AT2G40590.1 Ribosomal protein S26e family protein8.1e-5479.7Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      PGQPGQAPRP G G  A
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA

AT3G56340.1 Ribosomal protein S26e family protein2.4e-5380.45Show/hide
Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA
        F RR++D PK      P QPGQAPRP G G PA
Subjt:  FLRRRDDQPKPGQPGQPGQPGQAPRPVGAGNPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGTGGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAA
GAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGATGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACT
GTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAG
CCAGGTCAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGTCCTGTTGGAGCTGGAAATCCTGCTCGTGTGTAA
mRNA sequenceShow/hide mRNA sequence
CAAAAACTCTAATCGGCTGTTTCTTCTCTTTCTCTCTGCTTCTCAAGGCCTAAAGCTTTGAAACAATGACTTTCAAGCGCAGGAACGGCGGACGTAACAAGCACGGTCGT
GGACACGTTAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCCAAGGACAAGGCGATTAAGAGATTTCTTGTGAGGAATATTGTTGAGCAGGCTGCTGTGAGGGA
TGTCCAAGAAGCCTGTGTCTATGATCAATACACTCTCCCAAAGCTTTATGCCAAGATGCAATACTGTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTC
GTACTGACAGAAGGAATCGGCAACCACCACAGCGCTTCCTCAGACGCAGGGATGATCAGCCAAAGCCAGGTCAGCCAGGTCAGCCAGGTCAGCCAGGCCAAGCACCTCGT
CCTGTTGGAGCTGGAAATCCTGCTCGTGTGTAA
Protein sequenceShow/hide protein sequence
MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFLRRRDDQPK
PGQPGQPGQPGQAPRPVGAGNPARV