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Carg24486 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24486
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionARM repeat superfamily protein
Genome locationCarg_Chr04:599081..601660
RNA-Seq ExpressionCarg24486
SyntenyCarg24486
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7030635.1 hypothetical protein SDJN02_04672 [Cucurbita argyrosperma subsp. argyrosperma]1.5e-115100Show/hide
Query:  MRIIVSKLTAVKFCSLSLSLSSFLFSEISSMVFPLTCISFSISAEGNLRGPCNFALFQLTTNVIELISEIEKEAERKVGWLLKLIFAGTATFLGYHIFPY
        MRIIVSKLTAVKFCSLSLSLSSFLFSEISSMVFPLTCISFSISAEGNLRGPCNFALFQLTTNVIELISEIEKEAERKVGWLLKLIFAGTATFLGYHIFPY
Subjt:  MRIIVSKLTAVKFCSLSLSLSSFLFSEISSMVFPLTCISFSISAEGNLRGPCNFALFQLTTNVIELISEIEKEAERKVGWLLKLIFAGTATFLGYHIFPY

Query:  MGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAE
        MGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAE
Subjt:  MGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAE

Query:  DTQVNEYKSNLMKRFRDLSYDVSS
        DTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  DTQVNEYKSNLMKRFRDLSYDVSS

XP_022941867.1 uncharacterized protein LOC111447100 isoform X1 [Cucurbita moschata]8.7e-79100Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

XP_022941868.1 uncharacterized protein LOC111447100 isoform X2 [Cucurbita moschata]8.7e-79100Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

XP_022996596.1 uncharacterized protein LOC111491787 isoform X1 [Cucurbita maxima]4.3e-7899.36Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAIS+SDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

XP_023526983.1 uncharacterized protein LOC111790336 isoform X2 [Cucurbita pepo subsp. pepo]4.3e-7899.36Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEAVGALHKAGAILVIKSTPDSAED QVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

TrEMBL top hitse value%identityAlignment
A0A0A0KM85 Uncharacterized protein1.7e-7596.15Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGY IFPYMGDNLLQQSVSLL+VKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEA GALHKAGAILVIKSTPDSAED +VNEYKSNLMKRFRDL YDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

A0A6J1FNN3 uncharacterized protein LOC111447100 isoform X14.2e-79100Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

A0A6J1FTA5 uncharacterized protein LOC111447100 isoform X24.2e-79100Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

A0A6J1K583 uncharacterized protein LOC111491787 isoform X12.1e-7899.36Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAIS+SDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

A0A6J1K968 uncharacterized protein LOC111491787 isoform X22.1e-7899.36Show/hide
Query:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
        EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK
Subjt:  EIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALK

Query:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        ALHAIS+SDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
Subjt:  ALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G56210.1 ARM repeat superfamily protein1.2e-5464.52Show/hide
Query:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA
        +E+EAERK+GW LK+ FAGTAT++GY  FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+IDDE+RMK+VE+GGAQELL+MLG+AKDD+TRKEALKA
Subjt:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA

Query:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        L A+S S EA   L   GA+ ++KSTP+S ED+ ++ YKSN++++  + +  VSS
Subjt:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

AT3G56210.2 ARM repeat superfamily protein1.2e-5464.52Show/hide
Query:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA
        +E+EAERK+GW LK+ FAGTAT++GY  FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+IDDE+RMK+VE+GGAQELL+MLG+AKDD+TRKEALKA
Subjt:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA

Query:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        L A+S S EA   L   GA+ ++KSTP+S ED+ ++ YKSN++++  + +  VSS
Subjt:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

AT3G56210.4 ARM repeat superfamily protein1.2e-5464.52Show/hide
Query:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA
        +E+EAERK+GW LK+ FAGTAT++GY  FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+IDDE+RMK+VE+GGAQELL+MLG+AKDD+TRKEALKA
Subjt:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA

Query:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        L A+S S EA   L   GA+ ++KSTP+S ED+ ++ YKSN++++  + +  VSS
Subjt:  LHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS

AT3G56210.5 ARM repeat superfamily protein3.9e-5363.69Show/hide
Query:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA
        +E+EAERK+GW LK+ FAGTAT++GY  FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+IDDE+RMK+VE+GGAQELL+MLG+AKDD+TRKEALKA
Subjt:  IEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKA

Query:  LHAISHS--DEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS
        L A+S S   EA   L   GA+ ++KSTP+S ED+ ++ YKSN++++  + +  VSS
Subjt:  LHAISHS--DEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSYDVSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCATAATTGTATCGAAGCTCACCGCCGTAAAATTCTGCTCTCTCTCTCTCTCTCTCTCGAGCTTTCTGTTTTCAGAAATTTCCTCCATGGTTTTTCCCCTTACTTG
CATTAGTTTCAGCATCTCTGCAGAAGGGAACCTGCGCGGACCCTGCAATTTCGCCCTTTTTCAGCTTACGACGAACGTGATTGAGTTAATTTCAGAGATCGAGAAGGAGG
CTGAAAGAAAAGTAGGATGGTTATTAAAACTAATCTTTGCTGGGACTGCCACATTTCTGGGTTACCACATTTTTCCATACATGGGGGATAACTTGTTGCAGCAATCTGTT
TCCCTCTTGCAAGTCAAGGATCCACTGTTTAAGAGGATGGGAGCATCGAGATTGGCTCGCTTTTCGATTGATGATGAAAAAAGGATGAAAATAGTGGAGATCGGTGGGGC
TCAGGAGCTCTTAAACATGCTCGGGGCTGCCAAAGACGACCGTACACGTAAGGAAGCTTTGAAGGCTTTACATGCCATCTCACATTCAGATGAAGCTGTTGGTGCTTTGC
ATAAAGCAGGGGCGATCTTGGTTATTAAATCGACCCCGGATTCAGCCGAAGATACGCAAGTAAACGAGTACAAGTCAAACCTAATGAAGAGATTTAGAGATCTTAGCTAT
GATGTTTCATCTTGA
mRNA sequenceShow/hide mRNA sequence
GGAGTCGACCCACACTGCCGGAGCCGGCGGCTGATTCTGCACCATGCGCATAATTGTATCGAAGCTCACCGCCGTAAAATTCTGCTCTCTCTCTCTCTCTCTCTCGAGCT
TTCTGTTTTCAGAAATTTCCTCCATGGTTTTTCCCCTTACTTGCATTAGTTTCAGCATCTCTGCAGAAGGGAACCTGCGCGGACCCTGCAATTTCGCCCTTTTTCAGCTT
ACGACGAACGTGATTGAGTTAATTTCAGAGATCGAGAAGGAGGCTGAAAGAAAAGTAGGATGGTTATTAAAACTAATCTTTGCTGGGACTGCCACATTTCTGGGTTACCA
CATTTTTCCATACATGGGGGATAACTTGTTGCAGCAATCTGTTTCCCTCTTGCAAGTCAAGGATCCACTGTTTAAGAGGATGGGAGCATCGAGATTGGCTCGCTTTTCGA
TTGATGATGAAAAAAGGATGAAAATAGTGGAGATCGGTGGGGCTCAGGAGCTCTTAAACATGCTCGGGGCTGCCAAAGACGACCGTACACGTAAGGAAGCTTTGAAGGCT
TTACATGCCATCTCACATTCAGATGAAGCTGTTGGTGCTTTGCATAAAGCAGGGGCGATCTTGGTTATTAAATCGACCCCGGATTCAGCCGAAGATACGCAAGTAAACGA
GTACAAGTCAAACCTAATGAAGAGATTTAGAGATCTTAGCTATGATGTTTCATCTTGAAGGAGATGGGGTGTCTTACATTTGCGAGATCGGTTGTTTCCACTCAAAATAC
TTTAACCATGTTAGAGATGTTGGGAAGGATTGAGATGTTGAGACCAGTTTTTTTTTATGCTTTTTAAGATTAAAATCAAGGCTTCTTCCTTACAGAGAATGTATAGTAGA
GCCAACCCAATTATTGAACAAATTTCTCAAAATTTACAATTTTTTTAAATATCGAGTCTCAGTGTTCTCTCGAGTCCCATTGTTGTTCTTAGCATATCGAATAAAATTTT
AAGGGTGTTATGAACTCTTTAGATTTAATTTTAGATTTAGACTCATTCTTCTTTTGCTCAC
Protein sequenceShow/hide protein sequence
MRIIVSKLTAVKFCSLSLSLSSFLFSEISSMVFPLTCISFSISAEGNLRGPCNFALFQLTTNVIELISEIEKEAERKVGWLLKLIFAGTATFLGYHIFPYMGDNLLQQSV
SLLQVKDPLFKRMGASRLARFSIDDEKRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDTQVNEYKSNLMKRFRDLSY
DVSS