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Carg24488 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24488
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
Genome locationCarg_Chr04:605492..607971
RNA-Seq ExpressionCarg24488
SyntenyCarg24488
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600897.1 hypothetical protein SDJN03_06130, partial [Cucurbita argyrosperma subsp. sororia]3.1e-5677.63Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDT+KGLAWINRASK QASV + SDRHP YLATDSE S+RR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

KAG7030637.1 hypothetical protein SDJN02_04674 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-104100Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRLVIPFTAKFTVKMGCLFSVWACKAYGYPLYSTFPHAHAVVAD
        QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRLVIPFTAKFTVKMGCLFSVWACKAYGYPLYSTFPHAHAVVAD
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRLVIPFTAKFTVKMGCLFSVWACKAYGYPLYSTFPHAHAVVAD

XP_022941871.1 uncharacterized protein LOC111447103 [Cucurbita moschata]1.2e-7698.68Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDTRKGLAWINRASK QASVWKASDRHPAYLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

XP_022996650.1 uncharacterized protein LOC111491826 [Cucurbita maxima]1.1e-7295.39Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPT RQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDTRKGLAWI+RASK QASV KASDRHP YLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

XP_023552657.1 uncharacterized protein LOC111810237 [Cucurbita pepo subsp. pepo]6.0e-7698.03Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDTRKGLAWINRASK QASVWKASDRHPAYLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

TrEMBL top hitse value%identityAlignment
A0A0A0KM25 Uncharacterized protein1.2e-5376.47Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPK-KNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLV
        MAKS P  +R QQFAK+V SSK PQS    +K +IR SP ETPIS SVRVISEP + K    E KNR PLADVVSDC KRWFQDTLKEA AGDT+MQVLV
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPK-KNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLV

Query:  GQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        GQMFCSGYGVPK+T+KGLAWI RASK QASVWKASDRHP YLATDSESSDRR+
Subjt:  GQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

A0A6J1FNN7 uncharacterized protein LOC1114471035.8e-7798.68Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDTRKGLAWINRASK QASVWKASDRHPAYLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

A0A6J1GZI5 uncharacterized protein LOC1114589315.6e-5676.97Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P A+ LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME KNR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

A0A6J1JUC7 uncharacterized protein LOC1114884397.4e-5676.97Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS P AS LQQFAK+ V SKKPQS   + K +IRVSP ETPI D+VRVISEP   KKNME +NR+PLADVVSDC KRWFQDTLKEA+AGD AMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDT+KGLAWINRASK QA V + SDRHP YLATDSE S+RR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

A0A6J1K2L5 uncharacterized protein LOC1114918265.1e-7395.39Show/hide
Query:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
        MAKS PLASRLQQFAKVVVSSKKPQSPT RQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG
Subjt:  MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVG

Query:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL
        QMFCSGYGVPKDTRKGLAWI+RASK QASV KASDRHP YLATDSESSDRR+
Subjt:  QMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G38450.1 CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597)5.4e-2744Show/hide
Query:  MAKSFPLASRLQQFAKVV---VSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQV
        M KS P+ + L+  +  V   + S KP  P +      + S   T  S++ R                 +PL+ VVSDCAKRWF+DTL+EA AG+  MQV
Subjt:  MAKSFPLASRLQQFAKVV---VSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQV

Query:  LVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSES
        L+GQM+ SGYGVPKD RKG  WI +AS+ ++SVWK  D+ P Y A+DS+S
Subjt:  LVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSES

AT5G05360.1 unknown protein3.3e-3260Show/hide
Query:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRR
        S PA P    +  NR+PLA VV DC +RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++S W+ SD+ P Y A+DS+S+D++
Subjt:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRR

AT5G05360.2 unknown protein4.9e-2862.07Show/hide
Query:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHP
        S PA P    +  NR+PLA VV DC +RWFQDTLKEA +GD  MQVLVGQM+CSGYG+PKD  KG AWIN+AS+ ++S W+ SD+ P
Subjt:  SEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVPKDTRKGLAWINRASKCQASVWKASDRHP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAATCGTTTCCATTGGCGTCTCGCCTTCAACAATTTGCCAAGGTCGTCGTCTCCTCCAAAAAGCCCCAATCACCCACGGCCAGGCAGAAGCCCAAGATCCGAGT
TTCGCCGCCTGAAACTCCGATCTCCGATTCGGTCCGAGTCATCTCGGAACCGGCGCAGCCGAAGAAGAATATGGAGGTGAAGAATCGAATTCCGTTGGCCGATGTGGTGT
CGGACTGCGCCAAACGGTGGTTCCAGGACACGCTCAAGGAGGCCAACGCCGGCGATACGGCAATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCTGGCTATGGAGTTCCC
AAGGACACTCGGAAGGGGCTTGCTTGGATCAATCGAGCTTCGAAATGTCAGGCATCAGTTTGGAAAGCAAGCGATAGACATCCAGCTTACTTAGCCACCGATTCGGAATC
AAGCGATAGGAGGTTAGTAATCCCGTTCACTGCCAAGTTCACAGTCAAAATGGGGTGTCTTTTCTCTGTGTGGGCATGTAAAGCTTATGGTTATCCATTGTATTCTACCT
TTCCTCATGCTCATGCTGTAGTGGCTGATTAA
mRNA sequenceShow/hide mRNA sequence
TGAAATGTTTTTGTAAATCCATGAGCAAGCCTGCGATTTGGAGAGGCCAAAAGCGGCGGTTCACAATCCCATCGGCTTAACAATCCTTTGTTTGATGGCAAAATCGTTTC
CATTGGCGTCTCGCCTTCAACAATTTGCCAAGGTCGTCGTCTCCTCCAAAAAGCCCCAATCACCCACGGCCAGGCAGAAGCCCAAGATCCGAGTTTCGCCGCCTGAAACT
CCGATCTCCGATTCGGTCCGAGTCATCTCGGAACCGGCGCAGCCGAAGAAGAATATGGAGGTGAAGAATCGAATTCCGTTGGCCGATGTGGTGTCGGACTGCGCCAAACG
GTGGTTCCAGGACACGCTCAAGGAGGCCAACGCCGGCGATACGGCAATGCAGGTCTTGGTAGGGCAGATGTTTTGCTCTGGCTATGGAGTTCCCAAGGACACTCGGAAGG
GGCTTGCTTGGATCAATCGAGCTTCGAAATGTCAGGCATCAGTTTGGAAAGCAAGCGATAGACATCCAGCTTACTTAGCCACCGATTCGGAATCAAGCGATAGGAGGTTA
GTAATCCCGTTCACTGCCAAGTTCACAGTCAAAATGGGGTGTCTTTTCTCTGTGTGGGCATGTAAAGCTTATGGTTATCCATTGTATTCTACCTTTCCTCATGCTCATGC
TGTAGTGGCTGATTAAACTTTAAAAGTGAATGATATGGTCTTACAAAGTATAACAATAATCTATTTCTTGTCAAATTTTCTGTTACAAATTTACAACAATGTTGAAGATG
TTGATAAATACTAAAGACAGAAGAAACCTTGTTCGGGTTGGTTTTGGGTCCCCTTCCTCTTCTTCTTGGTAGAGACTTGAAATAAATTGTGTATACTATTTCCCTTCACG
CTTTCCCTTTCTCCATTCCCATGGCTGCTCTGGGTTTCTAGAAGCCCACAACCC
Protein sequenceShow/hide protein sequence
MAKSFPLASRLQQFAKVVVSSKKPQSPTARQKPKIRVSPPETPISDSVRVISEPAQPKKNMEVKNRIPLADVVSDCAKRWFQDTLKEANAGDTAMQVLVGQMFCSGYGVP
KDTRKGLAWINRASKCQASVWKASDRHPAYLATDSESSDRRLVIPFTAKFTVKMGCLFSVWACKAYGYPLYSTFPHAHAVVAD