CuGenDBv2

Gene ID	Carg24561
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Rubredoxin-like domain-containing protein
Genome location	Carg_Chr11:41096..42532
RNA-Seq Expression	Carg24561
Synteny	Carg24561
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component) GO:0005506 - iron ion binding (molecular function)
InterPro domains	IPR024934 - Rubredoxin-like domain IPR024935 - Rubredoxin domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6587388.1 Mitochondrial phosphate carrier protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-79

100

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
        MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV

Query:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALV
        CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALV
Subjt:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALV

XP_004138023.1 uncharacterized protein LOC101207574 isoform X1 [Cucumis sativus]

2.1e-69

81.98

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS+SA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLRKQNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        PDKYFCPVCGAPKRRFRPYEQ+V+KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+AF
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

XP_022927654.1 uncharacterized protein LOC111434474 [Cucurbita moschata]

9.2e-86

100

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
        MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV

Query:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Subjt:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

XP_023516579.1 uncharacterized protein LOC111780418 isoform X1 [Cucurbita pepo subsp. pepo]

2.1e-69

83.04

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLP
        MAS SA+SL F LPPN HSKI QEDGGADR S          SLKSSF SPLR IPS RKQ  AVAAAPK SMRVASKQAYICRDCGYIYNDRTPFEKLP
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLP

Query:  DKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        D YFCPVCGAPKRRFRPYEQSVTKN NEFD RKARKAQIQKDEAIGKVLPIAAAVGI+ALVGLYLYLN+ F
Subjt:  DKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

XP_023531329.1 uncharacterized protein LOC111793604 [Cucurbita pepo subsp. pepo]

2.0e-85

99.39

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
        MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPF+KLPDKYFCPV
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV

Query:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Subjt:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LNF5 Rubredoxin-like domain-containing protein

1.0e-69

81.98

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL
        MAS+SA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLRKQNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        PDKYFCPVCGAPKRRFRPYEQ+V+KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+AF
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

A0A5A7UPF0 Rubredoxin family protein

8.4e-69

81.4

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL
        MASVSA+SL F LPP  H K+ QEDGG DR+S F       LSLKSSF SPLR IPSLR+QNS VAAA PK SMRVASKQAYICRDCGYIYNDRTPF+KL
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAA-PKVSMRVASKQAYICRDCGYIYNDRTPFEKL

Query:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        PDKYFCPVCGAPKRRFRPYEQ+V KN NEFD RKARKAQIQKDEAIGKVLPIAAA+GIVALVGLYLYLN+ F
Subjt:  PDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

A0A6J1EIL7 uncharacterized protein LOC111434474

4.5e-86

100

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
        MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV

Query:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Subjt:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

A0A6J1IG97 uncharacterized protein LOC111473110

4.5e-86

100

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
        MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPV

Query:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
Subjt:  CGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

A0A6J1JG21 uncharacterized protein LOC111484793 isoform X1

4.9e-69

82.46

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Query:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLP
        MAS SA+SL F LPPN HSKI QEDGGADR S          SLKSSF SPL  IPS RKQ  AVAAAPK S+RVASKQAYICRDCGYIYNDRTPFEKLP
Subjt:  MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSF-------LSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLP

Query:  DKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF
        D YFCPVCGAPKRRFRPYEQSVTKN NEFD RKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLN+ F
Subjt:  DKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

SwissProt top hits

e value

%identity

Alignment

O26258 Probable rubredoxin

9.8e-06

38.33

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Query:  VSMRVASKQAYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPYE
        +   V++ + Y CR CGYIY+             TPFE LP+ + CP CGA K+ F+P +
Subjt:  VSMRVASKQAYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPYE

P04170 Rubredoxin-1

9.8e-06

48.84

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Query:  QAYICRDCGYIY----NDRTPFEKLPDKYFCPVCGAPKRRFRP
        Q Y+C  CGY Y    +D  PF++LPD + CPVCG  K +F P
Subjt:  QAYICRDCGYIY----NDRTPFEKLPDKYFCPVCGAPKRRFRP

P24297 Rubredoxin

2.8e-05

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Query:  YICRDCGYIYND-----------RTPFEKLPDKYFCPVCGAPKRRFRPYE
        ++C+ CGYIY++            T FE+LPD + CP+CGAPK  F   E
Subjt:  YICRDCGYIYND-----------RTPFEKLPDKYFCPVCGAPKRRFRPYE

P58992 Rubredoxin-1

4.1e-04

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Query:  AYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPY
        +++C +CGYIY+              PF+KLPD + CPVC  PK +F  +
Subjt:  AYICRDCGYIYNDR-----------TPFEKLPDKYFCPVCGAPKRRFRPY

Q9AL94 Rubredoxin

2.4e-04

41.18

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Query:  YICRDCGYIY-----------NDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ
        Y+C  CGYIY           N  T FE +PD + CP+CG  K +F P E+
Subjt:  YICRDCGYIY-----------NDRTPFEKLPDKYFCPVCGAPKRRFRPYEQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G17170.1 rubredoxin family protein

4.1e-07

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Query:  NIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVL-PIA
        ++  L K+ +      K++    ++  +IC DCG+IY     F++ PD Y CP C APK+RF  Y+                   +   +AIG  L PI 
Subjt:  NIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVL-PIA

Query:  AAVGIVALVG
          VG++A +G
Subjt:  AAVGIVALVG

AT5G51010.1 Rubredoxin-like superfamily protein

2.5e-41

54.19

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Query:  LRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSL-RKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRR
        +  QLPP   + +Y          +  +L+ S F P  ++  L  K++ + ++AP+ SMRV+SKQAYICRDCGYIYNDRTPF+KLPD YFCPVC APKRR
Subjt:  LRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSL-RKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRR

Query:  FRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNN
        FR Y   V+KN N+ D RKARKA++Q+DEA+GK LPI  AVG++AL  LY Y+N+
Subjt:  FRPYEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNN

Sequences

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CDS sequence

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ATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGAAGACGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTT
GAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCCCCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCT
ATATCTGTCGTGATTGCGGGTACATTTACAACGACAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGTCCTGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCT
TATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCTAGAAAGGCACAGATCCAGAAAGATGAAGCTATTGGGAAGGTGCTGCCCATAGCTGCTGC
AGTGGGAATCGTGGCACTTGTAGGGTTGTACTTGTACCTGAATAACGCCTTTTAG

mRNA sequence

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GTTGAATTGGCGAGTCTGTAAGTTTGGAGAGGGAGATAGGATAGGATAAAAATGATTGGGAAGATTGAGATCGTTGATTGTCCGCCACTCATAGATTCACCACTTCACCC
ACTCTTTCTGAGTTTCTCTCGCCTACGACACCCAACCCACACCCACGATCCCCCTATCGATATCTCCTCCTCCCCTTCCTTCTGCTTCACATTTCCCCTTTTCAAATTTC
TCTGCTCTGCTCTGCTCTGCTCTCTTATTACTTCCAATGGCCTCTGTTTCAGCTACCTCTCTTAGGTTCCAGCTACCGCCCAACCAACATTCCAAGATCTACCAGGAAGA
CGGCGGCGCTGATAGGCACTCCAGCTTCTTATCTTTGAAATCCTCCTTCTTCTCTCCTTTACGTAACATTCCTTCTTTAAGGAAGCAAAACTCTGCTGTTGCAGCTGCCC
CCAAGGTCTCCATGCGCGTCGCGTCCAAACAAGCCTATATCTGTCGTGATTGCGGGTACATTTACAACGACAGAACGCCTTTTGAAAAATTGCCTGATAAGTATTTCTGT
CCTGTTTGTGGTGCTCCTAAGCGACGATTTAGGCCTTATGAGCAATCTGTGACTAAAAATGCTAACGAATTTGATACGAGGAAGGCTAGAAAGGCACAGATCCAGAAAGA
TGAAGCTATTGGGAAGGTGCTGCCCATAGCTGCTGCAGTGGGAATCGTGGCACTTGTAGGGTTGTACTTGTACCTGAATAACGCCTTTTAG

Protein sequence

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MASVSATSLRFQLPPNQHSKIYQEDGGADRHSSFLSLKSSFFSPLRNIPSLRKQNSAVAAAPKVSMRVASKQAYICRDCGYIYNDRTPFEKLPDKYFCPVCGAPKRRFRP
YEQSVTKNANEFDTRKARKAQIQKDEAIGKVLPIAAAVGIVALVGLYLYLNNAF

Carg24561 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome