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Carg24655 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24655
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUbiquitin-conjugating enzyme
Genome locationCarg_Chr06:7036743..7041396
RNA-Seq ExpressionCarg24655
SyntenyCarg24655
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000608 - Ubiquitin-conjugating enzyme E2
IPR016135 - Ubiquitin-conjugating enzyme/RWD-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028601.1 Ubiquitin-conjugating enzyme E2 5 [Cucurbita argyrosperma subsp. argyrosperma]5.4e-56100Show/hide
Query:  MKSVSGRFMFGLCFRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELS
        MKSVSGRFMFGLCFRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELS
Subjt:  MKSVSGRFMFGLCFRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELS

Query:  ENESESSEEEVAGKADL
        ENESESSEEEVAGKADL
Subjt:  ENESESSEEEVAGKADL

XP_022935452.1 ubiquitin-conjugating enzyme E2 4-like isoform X1 [Cucurbita moschata]1.0e-46100Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

XP_022935469.1 ubiquitin-conjugating enzyme E2 4-like isoform X3 [Cucurbita moschata]1.0e-46100Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

XP_023541016.1 ubiquitin-conjugating enzyme E2 4-like isoform X1 [Cucurbita pepo subsp. pepo]2.3e-4699.02Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESS+EEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

XP_023541017.1 ubiquitin-conjugating enzyme E2 4-like isoform X2 [Cucurbita pepo subsp. pepo]2.3e-4699.02Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESS+EEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

TrEMBL top hitse value%identityAlignment
A0A6J1D120 ubiquitin-conjugating enzyme E2 4 isoform X14.8e-4291.09Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAY+QRVKEY ERYAK EDI+AAPD+SSDEELSE+ES+S +EEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  D
        D
Subjt:  D

A0A6J1F5H9 ubiquitin-conjugating enzyme E2 4-like isoform X35.0e-47100Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

A0A6J1F5L1 ubiquitin-conjugating enzyme E2 4-like isoform X15.0e-47100Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

A0A6J1IAM3 ubiquitin-conjugating enzyme E2 4-like isoform X13.2e-4698.04Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAE+IVAAPDQSSDEELSENESESS+EEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

A0A6J1II06 ubiquitin-conjugating enzyme E2 4-like isoform X33.2e-4698.04Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAE+IVAAPDQSSDEELSENESESS+EEVAGKA
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  DL
        DL
Subjt:  DL

SwissProt top hitse value%identityAlignment
P16577 Ubiquitin-conjugating enzyme E2-23 kDa1.1e-3272.82Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDI-VAAPDQSSDEELSENES-ESSEEEVAG
        SGSVCLDVINQTWSPMFDLVN+FEVFLPQLLLYPNPSDPLNGEAA+LMMRD+ AY+ +VKEY ERYAK EDI     ++ SDEELS+ E  +S +E + G
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDI-VAAPDQSSDEELSENES-ESSEEEVAG

Query:  KAD
         AD
Subjt:  KAD

P42748 Ubiquitin-conjugating enzyme E2 43.9e-3373.15Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEE-----
        SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPLNGEAAALMMRDR AY+QRVKEY E+YAK  +   + D+SSDEELSE E  S  E+     
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEE-----

Query:  --VAGKAD
          +AGK D
Subjt:  --VAGKAD

P42749 Ubiquitin-conjugating enzyme E2 52.8e-3170.75Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENE--SESSEEE---
        SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPLNGEAAALMMRDR  Y+QRVKEY E+YAK        + SSD+E+SE+E  S+  +E+   
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENE--SESSEEE---

Query:  VAGKAD
        +AGK D
Subjt:  VAGKAD

P42750 Ubiquitin-conjugating enzyme E2 64.8e-3166.35Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESES---SEEEVA
        SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP NGEAA+L+MRDR AY+ +VKEY E+YAK E+I++  D   D+ +SE+ S+S    ++E+ 
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESES---SEEEVA

Query:  GKAD
        GKAD
Subjt:  GKAD

Q9P7R4 Ubiquitin-conjugating enzyme E2 83.0e-2558.42Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA
        SGSVCLDVINQTWSPMFD++N+FEVFLPQLL YPN SDPLNGEAAAL++R+   Y  +V++Y  RYA  ED     + SSD++   +    S +E+AG  
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEEVAGKA

Query:  D
        D
Subjt:  D

Arabidopsis top hitse value%identityAlignment
AT1G14400.1 ubiquitin carrier protein 15.9e-0834.33Show/hide
Query:  FRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRER
        +  GS+CLD++   WSP++D+  +    +  LL  PNP+ P N EAA +    +  Y++RV++  E+
Subjt:  FRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRER

AT1G63800.1 ubiquitin-conjugating enzyme 52.0e-3270.75Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENE--SESSEEE---
        SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPLNGEAAALMMRDR  Y+QRVKEY E+YAK        + SSD+E+SE+E  S+  +E+   
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENE--SESSEEE---

Query:  VAGKAD
        +AGK D
Subjt:  VAGKAD

AT2G02760.1 ubiquiting-conjugating enzyme 22.0e-0835.82Show/hide
Query:  FRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRER
        +  GS+CLD++   WSP++D+  +    +  LL  PNP+ P N EAA +    +  Y++RV+E  E+
Subjt:  FRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRER

AT2G46030.1 ubiquitin-conjugating enzyme 63.4e-3266.35Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESES---SEEEVA
        SG+VCLDVINQTWSPMFDL+NVFE FLPQLLLYPNPSDP NGEAA+L+MRDR AY+ +VKEY E+YAK E+I++  D   D+ +SE+ S+S    ++E+ 
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESES---SEEEVA

Query:  GKAD
        GKAD
Subjt:  GKAD

AT5G41340.1 ubiquitin conjugating enzyme 42.8e-3473.15Show/hide
Query:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEE-----
        SGSVCLDVINQTWSPMFDLVNVFE FLPQLLLYPNPSDPLNGEAAALMMRDR AY+QRVKEY E+YAK  +   + D+SSDEELSE E  S  E+     
Subjt:  SGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEE-----

Query:  --VAGKAD
          +AGK D
Subjt:  --VAGKAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCGGTTTCAGGTCGTTTCATGTTTGGTCTTTGTTTTAGGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGT
TTTTGAAGTGTTCCTACCACAACTTCTTTTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAG
TAAAAGAATACCGTGAAAGATACGCCAAGGCAGAAGACATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCCGAGTCGAGCGAGGAGGAA
GTTGCAGGGAAAGCGGACCTCTAA
mRNA sequenceShow/hide mRNA sequence
TCTCTCTCTCTCTCTCCTCTGTTATTTTCCCCTTCTTTTCTCTCTCTCTCTCTCTAGACTTGTGAAGAACCCTTTTAAGCTTTTTCATTTCAAATTTTGAAGCAAAAATT
TCCGTTCATCTTTATTCAAAATCCAAAAGAAACCATGTCTTCTCCAAGCAAACGCCGAGAGATGGACTTGATGAAACTGATGATGAGCGATTACAAAGTGGAGATGATTA
ATGATGGGATGCAAGAGTTTTATGTAGAGTTTCATGGACCCAGTGAGAGTCCTTATCATGGAGGTGTATGGAGGATACGAGTCGAACTCCCGGACGCTTACCCGTATAAA
TCGCCTTCGATAGGATTCGTTAACAAAATTTACCACCCCAATGTTGATGAGATGTGAGTTCATCATGTGTTCTTAGCTTAAAATGAAGTCGGTTTCAGGTCGTTTCATGT
TTGGTCTTTGTTTTAGGTCGGGTTCGGTTTGTTTGGACGTTATCAATCAAACTTGGAGTCCCATGTTCGATCTTGTAAATGTTTTTGAAGTGTTCCTACCACAACTTCTT
TTGTATCCCAATCCATCAGATCCTTTGAATGGAGAGGCTGCAGCCTTGATGATGCGTGACCGTGTTGCTTATGATCAAAGAGTAAAAGAATACCGTGAAAGATACGCCAA
GGCAGAAGACATAGTAGCTGCACCCGACCAATCAAGCGACGAGGAACTAAGTGAAAATGAATCCGAGTCGAGCGAGGAGGAAGTTGCAGGGAAAGCGGACCTCTAAGGGC
TCATTTGAAGTACCTTCCACTGTACAAATTGTGTCTCTGCTTGAATGCTTTCTCCTGTCATGTATATAAGAAAATGAATGCTCTTTTTACGTTGCAATCATCATATGGTG
TTAGATTATGTCAAGGAAGGACTTGGTGATTCTAAACTTGTTATGCTTTGCTTACAACTGACCTTTTAAACTAAAGTTCATATTCAATTTCAATATTACTTGTTTATGCT
TTATTCTAACAAAAAA
Protein sequenceShow/hide protein sequence
MKSVSGRFMFGLCFRSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRVAYDQRVKEYRERYAKAEDIVAAPDQSSDEELSENESESSEEE
VAGKADL