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Carg24657 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24657
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA replication complex GINS protein SLD5
Genome locationCarg_Chr06:7052102..7053973
RNA-Seq ExpressionCarg24657
SyntenyCarg24657
Gene Ontology termsGO:0000727 - double-strand break repair via break-induced replication (biological process)
GO:0006261 - DNA-dependent DNA replication (biological process)
GO:0000811 - GINS complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597134.1 Calmodulin-binding receptor-like cytoplasmic kinase 2, partial [Cucurbita argyrosperma subsp. sororia]3.9e-2866.97Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETW-----------------------------------VMESIPLITLEDNFKLVELIDEWWSIEGT
        CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETW                                   VME+IPLITLEDNFKLVELIDEWWSIEGT
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETW-----------------------------------VMESIPLITLEDNFKLVELIDEWWSIEGT

Query:  GKDRSAISI
        GKDRSAISI
Subjt:  GKDRSAISI
KAG7028603.1 hypothetical protein SDJN02_09784, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-34100Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVELIDEWWSIEGTGKDRSAISI
        CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVELIDEWWSIEGTGKDRSAISI
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVELIDEWWSIEGTGKDRSAISI
TYK17610.1 DNA replication complex GINS protein SLD5 isoform X1 [Cucumis melo var. makuwa]6.6e-0776.92Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ+IL+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
XP_031737760.1 DNA replication complex GINS protein SLD5 isoform X2 [Cucumis sativus]6.6e-0776.92Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ+IL+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
XP_038876461.1 DNA replication complex GINS protein SLD5 [Benincasa hispida]2.9e-0779.49Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ+ILRQSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
TrEMBL top hitse value%identityAlignment
A0A0A0L8W0 DNA replication complex GINS protein SLD53.2e-0776.92Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ+IL+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
A0A1S3AVG5 DNA replication complex GINS protein SLD54.1e-0774.36Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ++L+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
A0A1S4DSZ1 DNA replication complex GINS protein SLD54.1e-0774.36Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ++L+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
A0A5A7U3S1 DNA replication complex GINS protein SLD54.1e-0774.36Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ++L+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
A0A5D3D1W7 DNA replication complex GINS protein SLD53.2e-0776.92Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
        C HDMKKHFDESVLSKLPN+YQ+IL+QSIT EE+  V E
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G49010.1 DNA replication protein-related6.5e-0534.72Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME---SIPLITLEDNFKLVELIDEWWSIEGTGKDR
        C  D+ KHF+E+VL KLP +YQ +L+QS+  E +  V +      ++    NF  + L +E  S E    +R
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVME---SIPLITLEDNFKLVELIDEWWSIEGTGKDR
AT5G49010.2 DNA replication protein-related4.5e-0645.45Show/hide
Query:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVEL
        C  D+ KHF+E+VL KLP +YQ +L+QS+ I E   +  S+ LITL+ N   + L
Subjt:  CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVEL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TGCATTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCTAATAGTTATCAAGAAATTTTGAGGCAATCTATAACAATTGAAGAGGAGACGTGGGT
GATGGAGAGTATTCCACTGATTACTTTGGAGGACAATTTCAAATTGGTTGAGCTCATAGATGAATGGTGGAGCATTGAAGGCACTGGCAAAGACAGGTCAGCCATTTCAA
TCTGA
mRNA sequenceShow/hide mRNA sequence
TGCATTCATGATATGAAAAAACATTTTGATGAGAGTGTTCTATCAAAATTGCCTAATAGTTATCAAGAAATTTTGAGGCAATCTATAACAATTGAAGAGGAGACGTGGGT
GATGGAGAGTATTCCACTGATTACTTTGGAGGACAATTTCAAATTGGTTGAGCTCATAGATGAATGGTGGAGCATTGAAGGCACTGGCAAAGACAGGTCAGCCATTTCAA
TCTGATATCTCATGTTATTAAATTATGAATGTGACATTATAGTGTAGATTGTCAATGACAATTGACAAAACCAACCGTAGCCATTAGTTTATACATCAATTAGAAGTATC
ATATGCTTTAGATTTATTCTAAGTTTGAAATTGATATAAAGGACTAAATTAATAAAAATATTTTTAAAGTTTGTATCGTGTCTAAAAAAATAACCTTAAACTATCAAAAG
TTTCAAAAATATTCTTACGGTTAATTTTGGATGGAAACTGTTAATATTTTGTTTAAAGATACTTTCAAATTTTTGGAAAGATTTCATAAAATATCTTTTAATTTTCAGAG
TATTTCAAAAATACCTTTCTTCAAAAGCTTCGATAATAACC
Protein sequenceShow/hide protein sequence
CIHDMKKHFDESVLSKLPNSYQEILRQSITIEEETWVMESIPLITLEDNFKLVELIDEWWSIEGTGKDRSAISI