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Carg24659 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24659
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPectin lyase-like superfamily protein
Genome locationCarg_Chr06:7062472..7064468
RNA-Seq ExpressionCarg24659
SyntenyCarg24659
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
GO:0008194 - UDP-glycosyltransferase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7028605.1 putative polygalacturonase, partial [Cucurbita argyrosperma subsp. argyrosperma]8.3e-36100Show/hide
Query:  MPMEELCKNPIKAHMRGCYGRWGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        MPMEELCKNPIKAHMRGCYGRWGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
Subjt:  MPMEELCKNPIKAHMRGCYGRWGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

XP_004133855.1 probable polygalacturonase [Cucumis sativus]8.9e-1490.24Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

XP_022935413.1 probable polygalacturonase [Cucurbita moschata]1.4e-1492.68Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

XP_023540734.1 probable polygalacturonase [Cucurbita pepo subsp. pepo]1.1e-1495.12Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

XP_038877786.1 probable polygalacturonase [Benincasa hispida]6.8e-1492.68Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

TrEMBL top hitse value%identityAlignment
A0A0A0L8V4 Pectate_lyase_3 domain-containing protein4.3e-1490.24Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

A0A5A7TZA9 Putative polygalacturonase4.3e-1490.24Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

A0A5D3D2R4 Putative polygalacturonase4.3e-1490.24Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

A0A6J1FAH2 probable polygalacturonase6.7e-1592.68Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

A0A6J1II01 probable polygalacturonase4.3e-1490.24Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D NEWPV+EPLPSYGHGRDTSGGRYISLIFGTNLTDVV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

SwissProt top hitse value%identityAlignment
A7PZL3 Probable polygalacturonase1.0e-1270.73Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +D+++WPVI+PLPSYG GRD + GRY SLIFGTNLTDV++T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

Arabidopsis top hitse value%identityAlignment
AT3G61490.1 Pectin lyase-like superfamily protein1.8e-1265.85Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNE+P+++ LPSYG GRD +GGR+ SLIFGTNL+DV++T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

AT3G61490.2 Pectin lyase-like superfamily protein1.8e-1265.85Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNE+P+++ LPSYG GRD +GGR+ SLIFGTNL+DV++T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

AT3G61490.3 Pectin lyase-like superfamily protein1.8e-1265.85Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +DLNE+P+++ LPSYG GRD +GGR+ SLIFGTNL+DV++T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

AT4G23500.1 Pectin lyase-like superfamily protein6.8e-1273.68Show/hide
Query:  NEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        +++ VIEPLPSYG GRDT GGR+ISL+FG+NLTDVV+T
Subjt:  NEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT

AT4G33440.1 Pectin lyase-like superfamily protein3.6e-1373.17Show/hide
Query:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT
        KDL+EWP+IEPLPSYG GR+  GGR+ISLI G NLT+VV+T
Subjt:  KDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATATGAGGGGCTGTTATGGTAGATGGGGTAAGTTTGATGTTGTCATTAAGGATCTAAACGAATGGCCGGT
GATCGAACCGTTGCCATCCTACGGTCATGGAAGGGACACATCAGGGGGAAGGTACATCAGTTTAATATTTGGAACAAATCTCACTGATGTTGTCGTCACA
mRNA sequenceShow/hide mRNA sequence
ACTCACACCTTCCCCAAACAGCTCAGTTTCTCTTTGAAATCATGCCAATGGAGGAACTCTGCAAAAACCCCATTAAAGCTCATATGAGGGGCTGTTATGGTAGATGGGGT
AAGTTTGATGTTGTCATTAAGGATCTAAACGAATGGCCGGTGATCGAACCGTTGCCATCCTACGGTCATGGAAGGGACACATCAGGGGGAAGGTACATCAGTTTAATATT
TGGAACAAATCTCACTGATGTTGTCGTCACA
Protein sequenceShow/hide protein sequence
MPMEELCKNPIKAHMRGCYGRWGKFDVVIKDLNEWPVIEPLPSYGHGRDTSGGRYISLIFGTNLTDVVVT