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Carg24681 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24681
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 3
Genome locationCarg_Chr11:5893413..5893718
RNA-Seq ExpressionCarg24681
SyntenyCarg24681
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588434.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4999.01Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG
        MA SSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG

Query:  L
        L
Subjt:  L

KAG7022282.1 Protein RADIALIS-like 6, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-50100Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYG

Query:  L
        L
Subjt:  L

XP_022933513.1 protein RADIALIS-like 3 [Cucurbita moschata]1.7e-4294.62Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM

XP_022971553.1 protein RADIALIS-like 3 [Cucurbita maxima]5.9e-4395.7Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM

XP_023531644.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]2.9e-4293.55Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM
        MASSSLKHLRPEAMWT KQNKLFEMALALYDKETPERWQNVAKA+SGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM

TrEMBL top hitse value%identityAlignment
A0A6J1C2H2 protein RADIALIS-like 32.7e-3380.85Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR----AAGNGDEELRLV
        MASSSLK  RPEA WT KQNKLFE ALALYDKETPERWQN+A AV GKSADEV+RHY+ILLEDL+RIESG VPIPNYR    AAGN DEELRL+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR----AAGNGDEELRLV

A0A6J1F4Y7 protein RADIALIS-like 38.4e-4394.62Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSA+EVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM

A0A6J1GKW1 protein RADIALIS-like 33.5e-3382.22Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLV
        MASSSLK  RPEA WT KQNKLFE ALALYDKETPERW N+A AV GKSADEV+RHYEILLEDL RIESG VPIPNYR   NGDEELRL+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLV

A0A6J1I772 protein RADIALIS-like 32.9e-4395.7Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM
        MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRL+  +
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKM

A0A6J1ICR6 protein RADIALIS-like 39.3e-3483.33Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLV
        MASSSLK  RPEA WT KQNKLFE ALALYDKE PERW N+A AV GKSADEV+RHYEILLEDLQRIESG VPIPNYR A NGDEELRL+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLV

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 14.6e-2259.26Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG
        MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L++D+  IE+G VP PNYR +G
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG

Q1A173 Protein RADIALIS-like 61.7e-2161.54Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL+EDL  IE+G VP+PNY+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR

Q58FS3 Transcription factor RADIALIS1.9e-2062.69Show/hide
Query:  WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG
        W+ K+NK FE ALA+YDK+TP+RW NVA+AV G++ +EV++HYEIL+ED++ IESG VP PNYR  G
Subjt:  WTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG

Q6NNN0 Protein RADIALIS-like 36.0e-2260.98Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGN
        MAS+S+      A WT K+NKLFE ALA YD++TP+RW NVA+AV GKSA+EV RHYE+L+ D+  IESG  P PNYR+ GN
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGN

Q8GW75 Protein RADIALIS-like 55.4e-2355Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM
        MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL+EDL  IE   VP+P Y       ++ G  D +LRL+  M
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.9e-2455Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM
        MASSS+      + WT+KQNK+FE ALA+YDK+TP+RWQNVAKAV  KSA+EV+RHY+IL+EDL  IE   VP+P Y       ++ G  D +LRL+  M
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNY-------RAAGNGDEELRLVMKM

AT1G75250.1 RAD-like 61.2e-2261.54Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL+EDL  IE+G VP+PNY+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR

AT1G75250.2 RAD-like 61.2e-2261.54Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR
        MAS+S   + P   WT  QNK+FE ALA+YDK+TP+RW NVAKAV GK+ +EV+RHY+IL+EDL  IE+G VP+PNY+
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR

AT2G21650.1 Homeodomain-like superfamily protein1.3e-1947Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR-AAGNGDE-ELRLVMKMIKDMK
        MAS S+        WT KQNK FE ALA+YD++TP+RW NVA+AV GK+ +E +R Y++L+ D++ IE+G VP P+Y+   GN +   LR   K ++ MK
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYR-AAGNGDE-ELRLVMKMIKDMK

AT4G39250.1 RAD-like 13.3e-2359.26Show/hide
Query:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG
        MASSS+   +    WT KQNK FE ALA YD++TP RWQNVAK V GK+ +EV+RHYE+L++D+  IE+G VP PNYR +G
Subjt:  MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAG
ATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTA
TTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCAAGCTCTTTGAAGCATCTCCGACCGGAAGCGATGTGGACGACAAAGCAGAACAAGCTGTTTGAGATGGCATTGGCTTTGTACGACAAAGAGACGCCCGAGAG
ATGGCAGAACGTTGCCAAGGCCGTCAGCGGGAAGTCGGCAGACGAAGTCGAAAGACACTATGAGATACTCTTGGAAGATCTCCAGCGGATTGAGTCGGGGTGTGTTCCTA
TTCCAAATTATAGAGCTGCCGGAAATGGAGATGAAGAATTGAGGTTAGTGATGAAGATGATCAAAGATATGAAATATGGTTTATAA
Protein sequenceShow/hide protein sequence
MASSSLKHLRPEAMWTTKQNKLFEMALALYDKETPERWQNVAKAVSGKSADEVERHYEILLEDLQRIESGCVPIPNYRAAGNGDEELRLVMKMIKDMKYGL