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Carg24682 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24682
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein RADIALIS-like 1
Genome locationCarg_Chr11:5908128..5908370
RNA-Seq ExpressionCarg24682
SyntenyCarg24682
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036150.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]1.7e-2982.5Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVEDVKFIESG+VP+PYR SG  N
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

KAG6588435.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]3.9e-37100Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

XP_022933530.1 protein RADIALIS-like 1 [Cucurbita moschata]3.9e-37100Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

XP_022971586.1 protein RADIALIS-like 1 [Cucurbita maxima]1.9e-3698.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRD PDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

XP_023531686.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo]1.5e-3698.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGAS+
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

TrEMBL top hitse value%identityAlignment
A0A1S3BFW6 protein RADIALIS-like 18.4e-3082.5Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVEDVKFIESG+VP+PYR SG  N
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

A0A5A7SYK4 Protein RADIALIS-like 18.4e-3082.5Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGS +WT KQNKAFE+ALA YD+DTPDRWLNVA+AVGGKT EEVKRHY LLVEDVKFIESG+VP+PYR SG  N
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

A0A5A7SYM4 Protein RADIALIS-like 11.9e-2984.21Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNS
        MASMS+HGS  WTAKQNKAFEEALA YD+DTPDRWLNVA+A+GGKTEEEVKRHYQLL+EDVK IESG+VP+PYR S
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNS

A0A6J1F548 protein RADIALIS-like 11.9e-37100Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

A0A6J1I3P3 protein RADIALIS-like 19.3e-3798.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MASMSSHGSASWTAKQNKAFEEALARYDRD PDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.7e-2571.43Show/hide
Query:  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG
        +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+  IE+G VP+P YR SG
Subjt:  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG

Q1A173 Protein RADIALIS-like 61.2e-2063.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED+  IE+GRVP P   +  SN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

Q58FS3 Transcription factor RADIALIS5.6e-2365Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSGAS
        MAS    G   W+AK+NKAFE ALA YD+DTPDRW NVARAV G+T EEVK+HY++LVED+K+IESG+VP+P YR +G +
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSGAS

Q6NNN0 Protein RADIALIS-like 31.5e-2369.23Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG
        MAS S   SASWT K+NK FE ALA YD+DTPDRW NVARAVGGK+ EEV+RHY+LL+ DV  IESGR P+P YR++G
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG

Q9SIJ5 Protein RADIALIS-like 21.5e-2374.29Show/hide
Query:  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP
        SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++ IE+G VP+P
Subjt:  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP

Arabidopsis top hitse value%identityAlignment
AT1G75250.1 RAD-like 68.3e-2263.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED+  IE+GRVP P   +  SN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

AT1G75250.2 RAD-like 68.3e-2263.75Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN
        MAS S    + WT  QNK FE ALA YD+DTPDRW NVA+AVGGKT EEVKRHY +LVED+  IE+GRVP P   +  SN
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN

AT2G18328.1 RAD-like 41.1e-2164.94Show/hide
Query:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNS
        MAS SS  ++SWTA+++K FE ALA++D+DTPDRW  +ARAVGGK+ EEVKRHY+LL+ DV  IESGR P P YRN+
Subjt:  MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNS

AT2G21650.1 Homeodomain-like superfamily protein1.0e-2474.29Show/hide
Query:  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP
        SMSS+GS SWT KQNKAFE ALA YD+DTPDRW NVARAVGGKT EE KR Y LLV D++ IE+G VP+P
Subjt:  SMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP

AT4G39250.1 RAD-like 11.9e-2671.43Show/hide
Query:  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG
        +SMSS  S SWTAKQNKAFE+ALA YD+DTP+RW NVA+ VGGKT EEVKRHY+LLV+D+  IE+G VP+P YR SG
Subjt:  ASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYP-YRNSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTACGACCGAGACACACCTGACCGATGGCTCAA
TGTTGCAAGAGCTGTCGGTGGCAAAACTGAAGAGGAAGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTATCCGTATC
GAAACTCGGGAGCCAGTAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCATGTCTTCCCATGGCTCTGCTTCATGGACTGCAAAGCAAAACAAAGCCTTTGAGGAGGCTTTGGCACGGTACGACCGAGACACACCTGACCGATGGCTCAA
TGTTGCAAGAGCTGTCGGTGGCAAAACTGAAGAGGAAGTCAAAAGGCACTACCAACTTCTTGTGGAGGATGTCAAGTTCATTGAGTCGGGCCGTGTTCCCTATCCGTATC
GAAACTCGGGAGCCAGTAACTAA
Protein sequenceShow/hide protein sequence
MASMSSHGSASWTAKQNKAFEEALARYDRDTPDRWLNVARAVGGKTEEEVKRHYQLLVEDVKFIESGRVPYPYRNSGASN