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Carg24685 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24685
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Genome locationCarg_Chr11:5933049..5933489
RNA-Seq ExpressionCarg24685
SyntenyCarg24685
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588438.1 hypothetical protein SDJN03_17003, partial [Cucurbita argyrosperma subsp. sororia]1.8e-35100Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
        MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
KAG7022286.1 hypothetical protein SDJN02_16017, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-37100Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
XP_022136047.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia]1.4e-2986.36Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMP-ESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MA+VCRS+LTA GSR +AGRTRTL  KTLNPMP  SSSS+G+ SVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMP-ESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
XP_022933658.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucurbita moschata]6.3e-3391.95Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRSVLTATG+R + GRTRTL+RKTLNPMP SSSS+GLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
XP_023531748.1 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo]1.0e-3597.7Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRSVLTATGSR MAGRTRTLLRKTLNPMP+SSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
TrEMBL top hitse value%identityAlignment
A0A5D3BYV0 Protein NUCLEAR FUSION DEFECTIVE 62.0e-2477.27Show/hide
Query:  MASVCRSVLT-ATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASV RS+LT A  SR MAGRTR L  KTLNP+  SSSS+   S++RIVSSLA VESLMPLH+AVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLT-ATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
A0A6J1C4G8 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial7.0e-3086.36Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMP-ESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MA+VCRS+LTA GSR +AGRTRTL  KTLNPMP  SSSS+G+ SVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMP-ESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
A0A6J1F5F6 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like3.0e-3391.95Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRSVLTATG+R + GRTRTL+RKTLNPMP SSSS+GLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
A0A6J1GKU0 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like2.1e-2677.78Show/hide
Query:  MASVCRSVLTAT---GSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MAS+CRS+L A    GSR MAGRTRTL   TL P+P SSSS+G  SVSRI SSLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTAT---GSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
A0A6J1I675 protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial4.7e-2678.65Show/hide
Query:  MASVCRSVLTAT--GSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
        MASVCRS+L A   GSR MAGRTRTL   TL P+P SSSS+G  SVSRI  SLA+V+SLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
Subjt:  MASVCRSVLTAT--GSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G39300.1 unknown protein2.5e-1652.17Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSS------SKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEG
        MAS CRS L A GSR +  R+RT+ +K+LN  P ++S      S+ +   SR++S+L +VE+++PLHSAVASARL+S IA DS CWS LS+G
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSS------SKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEG
AT4G39300.2 unknown protein1.3e-1551.65Show/hide
Query:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSS------SKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE
        MAS CRS L A GSR +  R+RT+ +K+LN  P ++S      S+ +   SR++S+L +VE+++PLHSAVASARL+S IA DS CWS LS+
Subjt:  MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSS------SKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTTTGCCGATCAGTTCTCACAGCGACGGGTTCAAGGCCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAACCTTGAATCCAATGCCTGAGTCTTCTTC
CTCCAAAGGTCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCGCCTCAGCTCGGTTGAAGTCCAAAATTG
CCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTT
mRNA sequenceShow/hide mRNA sequence
CGTTCCGCCTACTCCAGAAGACCAGAAATGGCTTCCGTTTGCCGATCAGTTCTCACAGCGACGGGTTCAAGGCCCATGGCCGGCCGGACCAGAACACTGCTTCGTAAAAC
CTTGAATCCAATGCCTGAGTCTTCTTCCTCCAAAGGTCTCACTTCCGTTTCCAGGATTGTTTCGTCTTTGGCTACTGTGGAGTCTCTGATGCCACTCCATAGCGCCGTCG
CCTCAGCTCGGTTGAAGTCCAAAATTGCCGTCGATTCGCATTGCTGGAGCTGGCTTTCTGAAGGTTTT
Protein sequenceShow/hide protein sequence
MASVCRSVLTATGSRPMAGRTRTLLRKTLNPMPESSSSKGLTSVSRIVSSLATVESLMPLHSAVASARLKSKIAVDSHCWSWLSEGF