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Carg24744 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24744
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFarnesyl diphosphate synthase 2
Genome locationCarg_Chr09:5731901..5732227
RNA-Seq ExpressionCarg24744
SyntenyCarg24744
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048240.1 putative PGPS/D10 protein [Cucumis melo var. makuwa]2.9e-1965.06Show/hide
Query:  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
        T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG SVGSNLS+LA K T++M  +SP
Subjt:  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP

KAG6607735.1 hypothetical protein SDJN03_01077, partial [Cucurbita argyrosperma subsp. sororia]1.6e-2562.5Show/hide
Query:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT-GMLRGRSVGSNLSELAHKS
        MDHKPDHRAPRP  R++ +HH+K  FTDFDLED K+   +L S    S   K   +AK SCLCSPTTHIGSFRCRHHR + G+LRG SVGSNLS+L  KS
Subjt:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT-GMLRGRSVGSNLSELAHKS

Query:  TDLM
        ++ M
Subjt:  TDLM

KAG7024984.1 hypothetical protein SDJN02_13804, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-54100Show/hide
Query:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKST
        MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKST
Subjt:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKST

Query:  DLMTSYSP
        DLMTSYSP
Subjt:  DLMTSYSP

KGN44385.1 hypothetical protein Csa_015645 [Cucumis sativus]3.3e-3164.1Show/hide
Query:  MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSN
        MD+K DHRAPRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSN
Subjt:  MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSN

Query:  LSELAHKSTDLMTSYSP
        LS+L  K T+++ S+SP
Subjt:  LSELAHKSTDLMTSYSP

XP_010103953.1 uncharacterized protein LOC21403113 [Morus notabilis]4.3e-1555.1Show/hide
Query:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK
        MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Subjt:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK

TrEMBL top hitse value%identityAlignment
A0A0A0K3W3 Uncharacterized protein1.6e-3164.1Show/hide
Query:  MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSN
        MD+K DHRAPRP DRNN N        HHHK  FTD +LED KQ   +L S SP  S+A + PSSAKA+CLCSPTTHIGSFRCRHHRH+GM+RG SVGSN
Subjt:  MDHKPDHRAPRPIDRNNPN--------HHHKTQFTDFDLEDFKQGTNLLAS-SPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSN

Query:  LSELAHKSTDLMTSYSP
        LS+L  K T+++ S+SP
Subjt:  LSELAHKSTDLMTSYSP

A0A5A7TYF3 Putative PGPS/D10 protein1.4e-1965.06Show/hide
Query:  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP
        T+ +L D K   + L  SPS  S A K PSSAKA+CLCSPTTHIGSFRCRHHRH GM+RG SVGSNLS+LA K T++M  +SP
Subjt:  TDFDLEDFKQGTNLLASSPS-RSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP

A0A7J6EXD7 Uncharacterized protein3.0e-1448.91Show/hide
Query:  PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDL
        P ++    + +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+GSFRCRHHR  GMLRG SVGSNL++L  KS+ +
Subjt:  PIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDL

A0A7J6H8T3 Uncharacterized protein2.3e-1447.12Show/hide
Query:  MDHKPDHR-APRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK
        MD K + R +  P ++    + +K    + +LEDFK+ T++L  SP +R+ +    SS +++CLCSPTTH+GSFRCRHHR  GMLRG SVGSNL++L  K
Subjt:  MDHKPDHR-APRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSP-SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK

Query:  STDL
        S+ +
Subjt:  STDL

W9SBP1 Uncharacterized protein2.1e-1555.1Show/hide
Query:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK
        MD K + R+P+ I  NN N   K +  D +L + K+ T+LLA SP    A    SS + +CLCSPTTH GSFRCRHHR + MLRG SVGSNLSELA K
Subjt:  MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G24577.1 unknown protein9.5e-0550Show/hide
Query:  SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL
        S  K  C+CSPTTH GSF+C+ HR   + R +SV +N+
Subjt:  SSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNL

AT1G67910.1 unknown protein4.3e-0553.49Show/hide
Query:  SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV
        SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Subjt:  SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV

AT1G67910.2 unknown protein4.3e-0553.49Show/hide
Query:  SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV
        SR L+ +  S  K +CLCSPTTH GSFRCR HR   + R +S+
Subjt:  SRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSV

AT3G13227.1 serine-rich protein-related3.2e-0857.69Show/hide
Query:  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA
        S+     SS + +CLC+PTTH GSFRCR+HR     GM RG SV SNLS LA
Subjt:  SLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHT---GMLRGRSVGSNLSELA

AT5G55980.1 serine-rich protein-related5.4e-0860Show/hide
Query:  SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL
        S + +CLCSPTTH GSFRCR+HR   + R  S+GSNL+ L
Subjt:  SAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGG
CACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCT
GCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCATAAACCAGATCACAGGGCTCCGAGGCCCATCGACAGAAACAACCCCAATCACCACCACAAAACGCAATTCACAGACTTCGATCTAGAGGATTTTAAGCAAGG
CACTAACCTGCTCGCCTCTTCGCCGTCCCGATCACTGGCGCCCAAGGCCCCCTCCTCCGCCAAGGCCAGTTGTCTCTGCTCTCCCACCACTCACATCGGCTCCTTCCGCT
GCCGCCACCACCGCCATACCGGCATGCTCCGCGGCCGATCCGTTGGCTCCAATCTCTCTGAGTTGGCTCATAAATCCACTGACCTTATGACATCCTATTCGCCTTGA
Protein sequenceShow/hide protein sequence
MDHKPDHRAPRPIDRNNPNHHHKTQFTDFDLEDFKQGTNLLASSPSRSLAPKAPSSAKASCLCSPTTHIGSFRCRHHRHTGMLRGRSVGSNLSELAHKSTDLMTSYSP