; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24776 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24776
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnipped-B-like protein B isoform X1
Genome locationCarg_Chr14:13569633..13570174
RNA-Seq ExpressionCarg24776
SyntenyCarg24776
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582489.1 hypothetical protein SDJN03_22491, partial [Cucurbita argyrosperma subsp. sororia]5.7e-1695.56Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLKSHGFE ETTTPYVWAEAMPIDSVDIC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

KAG7018874.1 hypothetical protein SDJN02_20747, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-62100Show/hide
Query:  MRRRQCRLTRLISALYLTNVIDNAPCSISTHKFATGLVGWLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPYKLKAHGFEMETTTLYV
        MRRRQCRLTRLISALYLTNVIDNAPCSISTHKFATGLVGWLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPYKLKAHGFEMETTTLYV
Subjt:  MRRRQCRLTRLISALYLTNVIDNAPCSISTHKFATGLVGWLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPYKLKAHGFEMETTTLYV

Query:  WAEATLIDSVAICALPYVVPY
        WAEATLIDSVAICALPYVVPY
Subjt:  WAEATLIDSVAICALPYVVPY

KAG7018875.1 hypothetical protein SDJN02_20748, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-3183.91Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP-----YKLKAHGFEMETTTLYVWAEATLIDSVAICALPYVVPY
        WLLHSSNASKLKKLKSHGFE ETTTPYVWAEAMPIDSVDIC LP      KLK+HGFEMETTT YVWAEA  IDSV IC LPYVVPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLP-----YKLKAHGFEMETTTLYVWAEATLIDSVAICALPYVVPY

XP_023528644.1 zinc finger CCCH domain-containing protein 13-like isoform X1 [Cucurbita pepo subsp. pepo]2.5e-1695.56Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLK+HGFEMETTTPYVWAEAMPIDSVDIC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

XP_023528645.1 DEAD-box ATP-dependent RNA helicase 42-like isoform X2 [Cucurbita pepo subsp. pepo]2.5e-1695.56Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLK+HGFEMETTTPYVWAEAMPIDSVDIC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

TrEMBL top hitse value%identityAlignment
A0A5A7U1F1 Nipped-B-like protein B isoform X14.5e-1181.4Show/hide
Query:  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        L+SS+ASKLKKL +H FEMETTTPYVWAEAM IDS+DIC LPY
Subjt:  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

A0A5D3D0D4 Nipped-B-like protein B isoform X14.5e-1181.4Show/hide
Query:  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        L+SS+ASKLKKL +H FEMETTTPYVWAEAM IDS+DIC LPY
Subjt:  LHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

A0A6J1EA99 pre-mRNA-splicing factor 38B-like isoform X11.8e-1593.33Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLK+HGFEMETTT YVWAEAMPIDSVDIC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

A0A6J1EDB9 pre-mRNA-splicing factor 38B-like isoform X22.2e-1388.89Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLK+HGFEMETTT YVWAEAM IDSV IC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

A0A6J1IR02 eukaryotic translation initiation factor 5B-like1.0e-1591.11Show/hide
Query:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY
        WLLHSSNASKLKKLK+HGFEM+T+TPYVWAEAMPIDSVDIC LPY
Subjt:  WLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGCGCAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCTGACTAACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTT
GGTGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAGCTGAAGTCACACGGGTTCGAGATGGAAACAACGACGCCGTATGTATGGGCTGAGGCAATGCCGA
TTGACTCGGTTGATATCTGCACTCTACCATATAAACTGAAGGCACACGGGTTCGAGATGGAAACGACGACGCTGTATGTATGGGCAGAGGCAACGCTGATTGACTCGGTT
GCTATCTGCGCTCTACCGTACGTTGTTCCATATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGCGCAGGCAATGCCGATTGACTCGGTTGATATCTGCACTCTACCTGACTAACGTGATTGATAATGCTCCTTGCTCGATATCGACACACAAATTCGCTACTGGTTT
GGTGGGCTGGCTGCTGCATAGCAGCAATGCTTCCAAATTGAAGAAGCTGAAGTCACACGGGTTCGAGATGGAAACAACGACGCCGTATGTATGGGCTGAGGCAATGCCGA
TTGACTCGGTTGATATCTGCACTCTACCATATAAACTGAAGGCACACGGGTTCGAGATGGAAACGACGACGCTGTATGTATGGGCAGAGGCAACGCTGATTGACTCGGTT
GCTATCTGCGCTCTACCGTACGTTGTTCCATATTGA
Protein sequenceShow/hide protein sequence
MRRRQCRLTRLISALYLTNVIDNAPCSISTHKFATGLVGWLLHSSNASKLKKLKSHGFEMETTTPYVWAEAMPIDSVDICTLPYKLKAHGFEMETTTLYVWAEATLIDSV
AICALPYVVPY