CuGenDBv2

Gene ID	Carg24792
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	splicing factor 3B subunit 4-like
Genome location	Carg_Chr14:11367644..11370764
RNA-Seq Expression	Carg24792
Synteny	Carg24792
Gene Ontology terms	GO:0048026 - positive regulation of mRNA splicing, via spliceosome (biological process) GO:0005689 - U12-type spliceosomal complex (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR034159 - SF3B4, RNA recognition motif 2 IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582101.1 Splicing factor 3B subunit 4, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-159

88.05

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
        NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT

Query:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
Subjt:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

KAG7018516.1 Splicing factor 3B subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.9e-191

100

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Query:  MARTERTDSHFAYVADLESRSVLFFLYVLFLPASSINSCSNLPALRVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYDVDEKLLY
        MARTERTDSHFAYVADLESRSVLFFLYVLFLPASSINSCSNLPALRVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYDVDEKLLY
Subjt:  MARTERTDSHFAYVADLESRSVLFFLYVLFLPASSINSCSNLPALRVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYDVDEKLLY

Query:  DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLP
        DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLP
Subjt:  DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLP

Query:  KVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPP
        KVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPP
Subjt:  KVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPP

Query:  MGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        MGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
Subjt:  MGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

XP_022955618.1 splicing factor 3B subunit 4-like [Cucurbita moschata]

4.7e-156

86.59

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
        N SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ VAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT

Query:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        QPQ+RRPPP PMQQQLGMPPMQMSSMPLPPPPNHIPPPLP+SG
Subjt:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

XP_022979818.1 splicing factor 3B subunit 4-like [Cucurbita maxima]

8.6e-150

84.1

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI VSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
        N SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ VAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQ RPPPPNMPPPPPQAPTHSM +PPPMGMG 
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT

Query:  QPQLRRPPPPPM---QQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        QPQLRRPPPPPM   QQQLG PPMQMSSMPLPPP NH+ PPLPSSG
Subjt:  QPQLRRPPPPPM---QQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

XP_038878136.1 splicing factor 3B subunit 4 [Benincasa hispida]

3.3e-141

80.52

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G
        N + GAPVPPRPFANGA+ PSPIPAIRPPPPQ VAFPPM M GQP AWQGQPQQ  QMMPGS + PPVQQFRPPPPNMP PPPQA  HSMP+PPPMGM G
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G

Query:  TQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
         QP L RPPPPPMQQQ G PPMQMSSMP PPPPNHIPPPLPSSG
Subjt:  TQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LAZ0 Uncharacterized protein

1.1e-139

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G
        N + GAPVPPRPFANGA+ P+PIPAIRP PPQ VAFPPM M GQP AWQGQPQQ  QMMPGS + PPVQQFRPPPPNMP PPPQA  HSMP+PPPMGM G
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G

Query:  TQPQLRRPPPPPMQQQL-GMPPMQMSSMPLPPPPNHIPPPLPSSG
         QPQL RPPPPPMQQQ  G PPMQMSSMP PPPPNHIPPPLPSSG
Subjt:  TQPQLRRPPPPPMQQQL-GMPPMQMSSMPLPPPPNHIPPPLPSSG

A0A5A7VR80 Splicing factor 3B subunit 4

2.5e-139

80.17

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY--------------------------------------DVDEKLLYDTFSAFG
        +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                      DVDEKLLYDTFSAFG
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY--------------------------------------DVDEKLLYDTFSAFG

Query:  VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNA
        VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPN 
Subjt:  VIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNA

Query:  SFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-GTQ
        + GAPVPPRPFANGA+ P+PIPAIRP PPQ VAFPPM M GQP AWQGQPQQ  QMMPGS + PPVQQFRPPPPNMP PPPQA  HSMP+PPPMGM G Q
Subjt:  SFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-GTQ

Query:  PQLRRPPPPPMQQQL-GMPPMQMSSMPLPPPPNHIPPPLPSSG
        P L RPPPPPMQQQ  G PPMQMSSMP PPPPNHIPPPLPSSG
Subjt:  PQLRRPPPPPMQQQL-GMPPMQMSSMPLPPPPNHIPPPLPSSG

A0A6J1G8U2 splicing factor 3B subunit 4-like

6.0e-141

80.35

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEE LWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G
        N + G  +PPRPFANG +APSPIPAIRPPPPQ VAFPPMQM GQP AWQGQPQQQ Q+MPGS MLPPVQQFRPPPPNMPPPPPQAP HSMP+PPPMGM G
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGM-G

Query:  TQPQLRRPPPPPMQQQL--GMPPMQMSSMPLPPPPNHIPPPLPSSG
         QP L RPPPPPMQQQ   G PPMQMSSMP PPPPNHIPPP PSSG
Subjt:  TQPQLRRPPPPPMQQQL--GMPPMQMSSMPLPPPPNHIPPPLPSSG

A0A6J1GUH0 splicing factor 3B subunit 4-like

2.3e-156

86.59

Show/hide

Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
        N SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ VAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT

Query:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        QPQ+RRPPP PMQQQLGMPPMQMSSMPLPPPPNHIPPPLP+SG
Subjt:  QPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

A0A6J1IXE0 splicing factor 3B subunit 4-like

4.2e-150

84.1

Show/hide

Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
        FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQI VSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQP

Query:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT
        N SFGAPVPPRPFANGAMAPSPIPAIRPPPPQ VAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQ RPPPPNMPPPPPQAPTHSM +PPPMGMG 
Subjt:  NASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGT

Query:  QPQLRRPPPPPM---QQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG
        QPQLRRPPPPPM   QQQLG PPMQMSSMPLPPP NH+ PPLPSSG
Subjt:  QPQLRRPPPPPM---QQQLGMPPMQMSSMPLPPPPNHIPPPLPSSG

SwissProt top hits

e value

%identity

Alignment

O14102 Spliceosome-associated protein 49

1.5e-32

37.62

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYD-----------------------------------------VDEKLLYDTFS
        +V++  L+EL +QAGPVVN+++P+DRV N H G+GF EF  E+D +Y                                          VDE++LYDTFS
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYD-----------------------------------------VDEKLLYDTFS

Query:  AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAAS--------NPQKSRPHTLFASGP
        A G +V  P++ RD + G S+G+GF+SYDSFE +DAAIEAMN Q+L N+ ITVSYA+K++ KGERHG  AER LAA+         PQ + P   F+   
Subjt:  AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAAS--------NPQKSRPHTLFASGP

Query:  PTLPKVAQPNASFGA----PVPPRPF--ANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQA
        P     A   A+  A    PVP  P   A  A+ P  IP + P    +  FP M            P     M PG   L P     PPPP M    P  
Subjt:  PTLPKVAQPNASFGA----PVPPRPF--ANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQA

Query:  PTHSMPVPPPM
           ++P  P M
Subjt:  PTHSMPVPPPM

Q09442 Splicing factor 3B subunit 4

7.8e-53

45.14

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSE  LWEL VQAGPVV+V +PKDRVT  HQG+GF+EF  EEDADY                                        +VDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS---GPPTLP
        FGVI+  PKIMRD D+G S+GF FI++ SFEASD A+EAMNGQ+LCNR ITVSYA+K+D+KGERHGT AER+LAA NP   K RPH +F+    G P   
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFAS---GPPTLP

Query:  KVAQP--NASFGAPVPPRPFANGAMAPSPI------------PAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPP
         +A P  +A+  A    RP       P P+            P + PPPP     PP  M   P      P       P S M PP     PPPP   P 
Subjt:  KVAQP--NASFGAPVPPRPFANGAMAPSPI------------PAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPP

Query:  PPQAPTHSMPVPP----PMGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMP------LPPPPNHIPPPLPS
        PP  P    P PP    P GMG  P    PPPP M+   GMPP      P       PPPP   PP  PS
Subjt:  PPQAPTHSMPVPP----PMGMGTQPQLRRPPPPPMQQQLGMPPMQMSSMP------LPPPPNHIPPPLPS

Q15427 Splicing factor 3B subunit 4

5.8e-56

43.69

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY                                        ++DEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------
        FGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP      
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------

Query:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP-PQRVAFPPMQMVGQPQAWQGQP----QQQAQMMPGSFMLPPVQQFR------
                   P    P  SF  PVPP     GA+ P   PA+ PPP P   A       G P A  G P           PG    P + Q +      
Subjt:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP-PQRVAFPPMQMVGQPQAWQGQP----QQQAQMMPGSFMLPPVQQFR------

Query:  ---------PPPPNMPPPPPQAPTHSMPVPPPMGM--------------GTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS
                 PP     PPP   P    P PPPMGM              G  P      PPP+     MPP   +  P PPP  +    +PPP P+
Subjt:  ---------PPPPNMPPPPPQAPTHSMPVPPPMGM--------------GTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS

Q6AYL5 Splicing factor 3B subunit 4

1.3e-55

43.72

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY                                        ++DEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------
        FGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP      
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------

Query:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP---------PQRVAFP-------------PMQMVGQPQAWQGQPQ--------
                   P    P  SF  PVPP     GA+ P   PA+ PPP         P     P             P    G P     Q Q        
Subjt:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP---------PQRVAFP-------------PMQMVGQPQAWQGQPQ--------

Query:  --QQAQMMPGSFMLPPVQQFRPPPPNMP---PPPPQAPTHSMPVPPPMG-MGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS
                PGS   PP +    PPP MP   PPP   P    P   PMG  G  P      PPP+     MPP   +  P PPP  +    +PPP P+
Subjt:  --QQAQMMPGSFMLPPVQQFRPPPPNMP---PPPPQAPTHSMPVPPPMG-MGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS

Q8QZY9 Splicing factor 3B subunit 4

1.3e-55

43.72

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        +VSE  LWELF+QAGPVVN ++PKDRVT  HQGYGF+EF SEEDADY                                        ++DEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------
        FGVI+  PKIMRDPDTGNS+G+ FI++ SF+ASDAAIEAMNGQYLCNR ITVSYA+KKD+KGERHG+ AER+LAA NP  Q  RPH LFA  PP      
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPP------

Query:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP---------PQRVAFP-------------PMQMVGQPQAWQGQPQ--------
                   P    P  SF  PVPP     GA+ P   PA+ PPP         P     P             P    G P     Q Q        
Subjt:  ---------TLPKVAQPNASFGAPVPPRPFANGAMAPSPIPAIRPPP---------PQRVAFP-------------PMQMVGQPQAWQGQPQ--------

Query:  --QQAQMMPGSFMLPPVQQFRPPPPNMP---PPPPQAPTHSMPVPPPMG-MGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS
                PGS   PP +    PPP MP   PPP   P    P   PMG  G  P      PPP+     MPP   +  P PPP  +    +PPP P+
Subjt:  --QQAQMMPGSFMLPPVQQFRPPPPNMP---PPPPQAPTHSMPVPPPMG-MGTQPQLRRPPPPPMQQQLGMPPMQMSSMPLPPPPNH----IPPPLPS

Arabidopsis top hits

e value

%identity

Alignment

AT2G18510.1 RNA-binding (RRM/RBD/RNP motifs) family protein

1.9e-86

58.45

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Query:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA
        ++SEE LWELFVQAGPVVNVYVPKDRVTNLHQ YGFIE+RSEEDADY                                        DVDEKLLYDTFSA
Subjt:  RVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADY----------------------------------------DVDEKLLYDTFSA

Query:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVA
        FGVI +NPKIMRDPDTGNSRGFGFISYDSFEASDAAIE+M GQYL NRQITVSYAYKKDTKGERHGTPAER+LAA+NP  QKSRPHTLFA GPP+     
Subjt:  FGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNP--QKSRPHTLFASGPPTLPKVA

Query:  QPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSM------PV
        Q N        PRPFANG+M P PIPA R PPP     PP     QP +W  QPQQ +       M+PP  QFRPP    PPPPPQ   H        P 
Subjt:  QPNASFGAPVPPRPFANGAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSM------PV

Query:  PPPMGMGTQPQLRRPPP-------PPMQQQLGMPPMQMSSMPLPPPPNH
        PPP  MG       PP        PP QQQ   PP Q   M +PPPP H
Subjt:  PPPMGMGTQPQLRRPPP-------PPMQQQLGMPPMQMSSMPLPPPPNH

Sequences

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CDS sequence

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ATGGCACGCACCGAGAGAACAGACAGCCACTTCGCCTATGTCGCAGATCTAGAATCCAGGTCCGTCCTTTTTTTTCTTTACGTGCTCTTTCTCCCTGCTTCATCAATCAA
TTCATGTTCAAATCTCCCCGCGCTTAGGGTTTCTGAGGAGTCGCTTTGGGAGCTGTTTGTTCAAGCCGGCCCAGTTGTCAATGTGTATGTGCCGAAGGATAGAGTCACTA
ACTTGCATCAAGGATATGGGTTCATTGAGTTTCGCAGTGAGGAAGATGCAGATTATGATGTCGATGAGAAGCTTCTCTACGATACTTTCAGTGCATTTGGGGTCATTGTG
ACGAATCCTAAGATTATGAGGGATCCCGATACAGGAAACTCACGTGGGTTCGGTTTTATTAGCTATGACTCCTTCGAAGCATCTGATGCAGCAATTGAGGCGATGAACGG
CCAGTATCTTTGCAATCGTCAAATTACGGTTTCGTATGCCTATAAGAAAGATACGAAGGGAGAGCGGCACGGCACACCTGCAGAGAGAGTATTGGCTGCTAGCAATCCCC
AGAAGAGTAGGCCTCACACTTTGTTTGCCAGTGGCCCTCCGACACTTCCCAAGGTTGCACAGCCTAATGCTTCGTTTGGAGCTCCAGTGCCACCACGCCCCTTCGCAAAT
GGCGCAATGGCTCCCAGTCCGATTCCTGCAATACGTCCTCCACCACCGCAACGGGTGGCTTTCCCCCCTATGCAGATGGTTGGACAACCACAAGCCTGGCAGGGTCAACC
GCAGCAACAGGCTCAAATGATGCCTGGTTCCTTCATGCTGCCACCAGTTCAGCAGTTCCGGCCACCTCCACCAAACATGCCTCCTCCACCTCCTCAAGCTCCAACACATT
CCATGCCCGTCCCTCCACCAATGGGAATGGGAACACAGCCACAGCTTAGGCGACCACCGCCACCACCGATGCAGCAGCAGCTCGGAATGCCACCGATGCAAATGTCGTCA
ATGCCCCTCCCGCCACCTCCTAATCACATTCCGCCGCCTCTTCCATCTTCAGGCTGA

mRNA sequence

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Protein sequence

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MARTERTDSHFAYVADLESRSVLFFLYVLFLPASSINSCSNLPALRVSEESLWELFVQAGPVVNVYVPKDRVTNLHQGYGFIEFRSEEDADYDVDEKLLYDTFSAFGVIV
TNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPQKSRPHTLFASGPPTLPKVAQPNASFGAPVPPRPFAN
GAMAPSPIPAIRPPPPQRVAFPPMQMVGQPQAWQGQPQQQAQMMPGSFMLPPVQQFRPPPPNMPPPPPQAPTHSMPVPPPMGMGTQPQLRRPPPPPMQQQLGMPPMQMSS
MPLPPPPNHIPPPLPSSG

Carg24792 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome