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Carg24811 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24811
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNAD(P)H-quinone oxidoreductase subunit 3, chloroplastic
Genome locationCarg_Chr16:6155800..6156760
RNA-Seq ExpressionCarg24811
SyntenyCarg24811
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM88832.1 NADH-plastoquinone oxidoreductase subunit 3 [Lagenaria siceraria]4.8e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

AHM91130.1 NADH-plastoquinone oxidoreductase subunit 3, partial [Lagenaria siceraria]4.8e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

ALO22164.1 NdhC [Cucurbita foetidissima]4.8e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

KAG7015497.1 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]4.3e-163100Show/hide
Query:  MFHLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPPPRPLCSTSK
        MFHLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPPPRPLCSTSK
Subjt:  MFHLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPPPRPLCSTSK

Query:  ACTISPSYVPPPRYLFGLGLHELSSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLFGLGLHHLSSLCSTSKIPLRPLH
        ACTISPSYVPPPRYLFGLGLHELSSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLFGLGLHHLSSLCSTSKIPLRPLH
Subjt:  ACTISPSYVPPPRYLFGLGLHELSSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLFGLGLHHLSSLCSTSKIPLRPLH

Query:  HLSSLCDTSSHLSSLCDTAMSFDVLGVSSLCSTSKIPLRPLHHLSFLCDTSSHLSSLCDTSSHLSSLCSTSKIPFRSWPAPSLLL
        HLSSLCDTSSHLSSLCDTAMSFDVLGVSSLCSTSKIPLRPLHHLSFLCDTSSHLSSLCDTSSHLSSLCSTSKIPFRSWPAPSLLL
Subjt:  HLSSLCDTSSHLSSLCDTAMSFDVLGVSSLCSTSKIPLRPLHHLSFLCDTSSHLSSLCDTSSHLSSLCSTSKIPFRSWPAPSLLL

YP_009236285.1 NADH-plastoquinone oxidoreductase subunit 3 [Gynostemma pentaphyllum]4.8e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

TrEMBL top hitse value%identityAlignment
A0A1X9Q1U8 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic2.3e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

A0A218KG53 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic2.3e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

A0A2G5TYW2 REKLES domain-containing protein1.6e-0639.24Show/hide
Query:  PPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTIS-PPYVPPPRP--------LCSTSKACTIS-P
        PP  PPP    +L F L           S  STS I  PP  PPP  +    LHHL S  STS   TIS PP  PPP P        L S+    TIS P
Subjt:  PPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTIS-PPYVPPPRP--------LCSTSKACTIS-P

Query:  SYVPPPRYLFGLGLHEL--SSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMG
           PPP  +    LH L  S   STIS P +PPP     LS   +   S  SG +  G
Subjt:  SYVPPPRYLFGLGLHEL--SSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMG

A0A2G5VKU2 Uncharacterized protein2.3e-0533.21Show/hide
Query:  HLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPP-PRP-------
        H  D+SS    +  PP  PPP  +  L FHL    S          TS  PL P  PPP  +    LH L    STS   T S P +PP P P       
Subjt:  HLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPP-PRP-------

Query:  -LCSTSKACTISPSYVPPPRYLF-GLGLHEL--SSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLF-GLGLHHLSSLC
         L S+    TIS   +PPP   F    LH+L  S   ST S P +PPP  L  L     KL S +S       +    P +PPP   F    LH L S  
Subjt:  -LCSTSKACTISPSYVPPPRYLF-GLGLHEL--SSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLF-GLGLHHLSSLC

Query:  ST-----SKIPLRP-------LHHLSSLCDTSSHLSSLCD----TAMSFDVLGVSSLCSTSKIPLRPL
        ST     S IP  P       LH L S   TS+    L        + F +  + S  STS   + P+
Subjt:  ST-----SKIPLRP-------LHHLSSLCDTSSHLSSLCD----TAMSFDVLGVSSLCSTSKIPLRPL

A0A6H0ETI4 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic2.3e-05100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

SwissProt top hitse value%identityAlignment
A6MM41 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic6.9e-0792.59Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAP+SK PEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

Q09X12 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic6.9e-0792.59Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAP+SK PEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

Q0ZJ15 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic6.9e-0792.59Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAP+SK PEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

Q49KZ3 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic9.0e-0788.89Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        G+LAP+SK PEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

Q4VZH0 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic6.2e-08100Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVLAPLSKEPEKLSSYESGIEPMGDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW

Arabidopsis top hitse value%identityAlignment
ATCG00440.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein1.2e-0681.48Show/hide
Query:  GVLAPLSKEPEKLSSYESGIEPMGDAW
        GVL+P+ K PEKLSSYESGIEP+GDAW
Subjt:  GVLAPLSKEPEKLSSYESGIEPMGDAW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCCACCTCCAAGATACCTCTTCGGTCTTGGCCTTCACCATCTATCCTCCTTATGTTCCACCTCCAAGATACCTCTCCCTCCTTATGTTCCACCTCCAAGATACCTC
TTCGGTCTTGGCCTGCACCATCTCTCCACCATCCACCTCCAAGATACCTCTCCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGGTCTTGGCCTGCACCATCTCTCCT
CCTTATGTTCCACCTCCAAGGCCTGCACCATCTCTCCTCCTTATGTTCCACCTCCAAGGCCCTTATGTTCCACCTCCAAGGCCTGCACCATCTCTCCTTCTTATGTTCCA
CCTCCAAGATACCTCTTCGGTCTTGGCCTGCACGAACTCTCCTCCTTATGTTCCACCATCTCTCCTCCTTATGTTCCACCTCCTGGAGTTTTAGCCCCTCTTAGCAAAGA
GCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGGGTATCCTCCTTATGTTCCACCTCCAAGAAACCTCTTCGGTCTTGGCCTGCACC
ATCTCTCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGACCTCTGCACCATCTCTCCTCCTTATGTGATACCTCTTCCCATCTCTCCTCCTTATGTGATACCGCAATG
AGTTTTGATGTATTAGGGGTATCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGACCTCTGCACCATCTCTCCTTCTTATGTGATACCTCTTCCCATCTCTCCTCCTT
ATGTGATACCTCTTCCCATCTCTCCTCCTTATGTTCCACCTCCAAGATACCTTTTCGGTCTTGGCCTGCACCATCTCTCCTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCCACCTCCAAGATACCTCTTCGGTCTTGGCCTTCACCATCTATCCTCCTTATGTTCCACCTCCAAGATACCTCTCCCTCCTTATGTTCCACCTCCAAGATACCTC
TTCGGTCTTGGCCTGCACCATCTCTCCACCATCCACCTCCAAGATACCTCTCCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGGTCTTGGCCTGCACCATCTCTCCT
CCTTATGTTCCACCTCCAAGGCCTGCACCATCTCTCCTCCTTATGTTCCACCTCCAAGGCCCTTATGTTCCACCTCCAAGGCCTGCACCATCTCTCCTTCTTATGTTCCA
CCTCCAAGATACCTCTTCGGTCTTGGCCTGCACGAACTCTCCTCCTTATGTTCCACCATCTCTCCTCCTTATGTTCCACCTCCTGGAGTTTTAGCCCCTCTTAGCAAAGA
GCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGGGTATCCTCCTTATGTTCCACCTCCAAGAAACCTCTTCGGTCTTGGCCTGCACC
ATCTCTCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGACCTCTGCACCATCTCTCCTCCTTATGTGATACCTCTTCCCATCTCTCCTCCTTATGTGATACCGCAATG
AGTTTTGATGTATTAGGGGTATCCTCCTTATGTTCCACCTCCAAGATACCTCTTCGACCTCTGCACCATCTCTCCTTCTTATGTGATACCTCTTCCCATCTCTCCTCCTT
ATGTGATACCTCTTCCCATCTCTCCTCCTTATGTTCCACCTCCAAGATACCTTTTCGGTCTTGGCCTGCACCATCTCTCCTCCTTTGA
Protein sequenceShow/hide protein sequence
MFHLQDTSSVLAFTIYPPYVPPPRYLSLLMFHLQDTSSVLACTISPPSTSKIPLPPYVPPPRYLFGLGLHHLSSLCSTSKACTISPPYVPPPRPLCSTSKACTISPSYVP
PPRYLFGLGLHELSSLCSTISPPYVPPPGVLAPLSKEPEKLSSYESGIEPMGDAWGYPPYVPPPRNLFGLGLHHLSSLCSTSKIPLRPLHHLSSLCDTSSHLSSLCDTAM
SFDVLGVSSLCSTSKIPLRPLHHLSFLCDTSSHLSSLCDTSSHLSSLCSTSKIPFRSWPAPSLLL