; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24815 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24815
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationCarg_Chr16:6209672..6210734
RNA-Seq ExpressionCarg24815
SyntenyCarg24815
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577428.1 Protein LHCP TRANSLOCATION DEFECT, partial [Cucurbita argyrosperma subsp. sororia]1.6e-8899.41Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTSFNSRP LKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

KAG7015501.1 Protein LHCP TRANSLOCATION DEFECT [Cucurbita argyrosperma subsp. argyrosperma]3.2e-89100Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]4.3e-8698.24Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTS NSRP LKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]3.3e-8698.24Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSP SFNSRP LKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

XP_023520446.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita pepo subsp. pepo]5.6e-8697.65Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTSFNSRP LKLG SQFLGLQSN RWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELL+AGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein1.3e-7789.35Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MAS+SCTS SINL+P SFNSRP  KLG S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT2.5e-7688.76Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MAS+SCT TSINL+P SFNSRP  KL +S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT2.5e-7688.76Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MAS+SCT TSINL+P SFNSRP  KL +S FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTAIDRA N+EIKDFIL FS +K
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT2.1e-8698.24Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSPTS NSRP LKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT1.6e-8698.24Show/hide
Query:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
        MASVSCTSTSINLSP SFNSRP LKLG SQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD
Subjt:  MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYD

Query:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
        KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL
Subjt:  KMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT2.6e-4662.5Show/hide
Query:  MASVSCT-STSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGT
        MAS+ CT   S   S  S  +  +    ++  LG     R  + +    S     TC+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGT
Subjt:  MASVSCT-STSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS

A3BKF2 Protein LHCP TRANSLOCATION DEFECT2.6e-4662.5Show/hide
Query:  MASVSCT-STSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGT
        MAS+ CT   S   S  S  +  +    ++  LG     R  + +    S     TC+F    ++AEGAGIYGSQ RDDF RDDVEQYFNYMGMLAVEGT
Subjt:  MASVSCT-STSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGT

Query:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS
        YDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTA+DRA + + ++FIL F+
Subjt:  YDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFS

Q8VY88 Protein LHCP TRANSLOCATION DEFECT2.5e-5263.53Show/hide
Query:  SVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTY
        S SC  +      ++ +S P+L   SS+FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  SVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
         KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein1.7e-5363.53Show/hide
Query:  SVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTY
        S SC  +      ++ +S P+L   SS+FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTY
Subjt:  SVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTY

Query:  DKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK
         KMEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTAIDRA ++EI+D IL +S +K
Subjt:  DKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCTTCAATTCTCGCCCCCAACTCAAATTGGGTTCTTCCCAGTTTCTCGGTCTTCAATCCAA
CCTCCGATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGGAGCCAGT
CCCGAGACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATT
CACCCAGTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCG
AACCGCCATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGA
mRNA sequenceShow/hide mRNA sequence
CCCATTATTGGCCCACTGGATTCCGAGTGGATGGATAGAATCTGCAACACACTTGCCAGAGCAAAACCACATCTTCCGCTTACAAAACTTGCAAAAACTCAGCCATGGCT
TCCGTCTCCTGTACTTCTACCTCCATAAATCTCTCCCCAACATCCTTCAATTCTCGCCCCCAACTCAAATTGGGTTCTTCCCAGTTTCTCGGTCTTCAATCCAACCTCCG
ATGGGTCTCACCCATCGCCATTGGACCCTCCAACGGCTCTAGAGCAACCTGCTGGTTCAACCTTAGGCAAAATGCCGAAGGTGCAGGCATTTATGGGAGCCAGTCCCGAG
ACGACTTCATCAGAGACGATGTTGAGCAGTATTTCAACTACATGGGAATGCTGGCTGTGGAGGGTACGTATGACAAAATGGAGGCTCTATTGAGCCAAGACATTCACCCA
GTGGACATTTTGCTGATGCTGGCTGCCTCAGAAGGGGACAAACCAAAGCTTGAGGAGCTATTGAGAGCTGGGGCTAAGTATGATGTTAAAGATGTAGATGGCCGAACCGC
CATTGATAGGGCACCTAATCAAGAAATCAAGGATTTTATTCTTAATTTTTCTGTTGAGAAGCTATGATTTGGTTGGAAGGTGGCTCTCTCTGTTTTGGGATAGGCTTAGA
AAGAGGTTTAAGCTTTGCATTTCACTGCCTTCTGATGTTAAACACAATATGGTACACTTGTTTTTGGAGTCTTTTGAATGACTAGTAATGATCTTTGGCTTTC
Protein sequenceShow/hide protein sequence
MASVSCTSTSINLSPTSFNSRPQLKLGSSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDI
HPVDILLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEKL