; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24927 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24927
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: 50S rib s in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Genome locationCarg_Chr15:5115627..5116082
RNA-Seq ExpressionCarg24927
SyntenyCarg24927
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6579218.1 hypothetical protein SDJN03_23666, partial [Cucurbita argyrosperma subsp. sororia]4.1e-8099.34Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+KKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

KAG7016730.1 hypothetical protein SDJN02_21840, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-80100Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

XP_022939363.1 uncharacterized protein LOC111445302 [Cucurbita moschata]1.3e-7898.01Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

XP_022994049.1 uncharacterized protein LOC111489857 [Cucurbita maxima]4.2e-7796.03Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDL+RGNKLKDLFVSSPPYDGTD RINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKA+DHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

XP_023550276.1 uncharacterized protein LOC111808499 [Cucurbita pepo subsp. pepo]1.4e-7796.69Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP 
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGS G KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

TrEMBL top hitse value%identityAlignment
A0A0A0KPK6 Uncharacterized protein6.6e-6078.43Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-KNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN  RRSPRR +LPE KN DDRK L+R N LKDLFVSSPPY GTD  +++TA+ AP
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE-KNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAP

Query:  IRNVTPVC-KKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
         RNVTPVC K+K + H+GS G+ PGSPRP WTGFRYKYLL+KTWRPVL GIPE
Subjt:  IRNVTPVC-KKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1FLF8 uncharacterized protein LOC1114453026.3e-7998.01Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKADDHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1HGM7 uncharacterized protein LOC1114633731.2e-5877.48Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN +RRSPRR ALP+K  DD KDL+R N LKDLFVSSPPYD +D  INET  AAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+++ D  IG   + PGSPRP WTGFR+KYLL+KTWRP+LA IPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1I9M9 uncharacterized protein LOC1114704934.0e-5777.48Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLL THCGVAQSPTLSPRTSPL+HLRRRKTTLRMLLTRN    S RR ALP+K  DD KDL+R N LKDLFVSSPPYD +D  INET  AAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVC+++ D  IG  G+ PGSPRP WTGFRYKYLL+KTWRP+LAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

A0A6J1K1U6 uncharacterized protein LOC1114898572.0e-7796.03Show/hide
Query:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI
        MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKN+DDRKDL+RGNKLKDLFVSSPPYDGTD RINETAIAAPI
Subjt:  MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPI

Query:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        RNVTPVCKKKA+DHIGSAG KPGSPRP WTGFRYKYLLQKTWRPVLAGIPE
Subjt:  RNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G66890.1 FUNCTIONS IN: molecular_function unknown4.4e-1641.07Show/hide
Query:  SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE--------KNVDDRKDLTRGNKLKDLFVSSPPYD--------
        SL KFKLL+THC  VA+SPT     SP++HLRRRK TLR+LLT     RS  R  LPE        K  D R  +    KL DLFVSSPP++        
Subjt:  SLLKFKLLSTHCG-VAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPE--------KNVDDRKDLTRGNKLKDLFVSSPPYD--------

Query:  --GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
          GT   + E     P+  V+       +      GF  GS RP+ +      LL+++WRPVL  IPE
Subjt:  --GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

AT1G68430.1 unknown protein7.5e-1640.99Show/hide
Query:  MASLLKFKLLSTHCGV-AQSPTL--SPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTD-------AR
        MA+L +FK L T CGV AQSPT   SPRTSPL+ LRR+KTTL+MLL    S  SP R           KD+  G KLKDLFVSS   +           +
Subjt:  MASLLKFKLLSTHCGV-AQSPTL--SPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTD-------AR

Query:  INETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
          E  +AA    +    + + +              PVW GF  K LLQ+ WRP L  I E
Subjt:  INETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE

AT5G16200.1 50S ribosomal protein-related2.1e-1037.35Show/hide
Query:  MASLLKFKLLSTH----CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNF-SRRSPRRCALPEKNVDDRK--DLTRGN------KLKDLFVS--SPPYD
        ++ L KFKL + H       A SPT+SP  SP+ +LRRRK TLRML  ++  SRR   R  L E    D    +  RGN      KL++L V+  SPPY 
Subjt:  MASLLKFKLLSTH----CGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNF-SRRSPRRCALPEKNVDDRK--DLTRGN------KLKDLFVS--SPPYD

Query:  GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE
        G   R +   I      ++P+      D       + GS   V   FR + +L+K WRPVL  IPE
Subjt:  GTDARINETAIAAPIRNVTPVCKKKADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAAAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTACGCCGCCGTAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACGTAGACGACCGTAAGGATTTGACTCGAGGCAACAAGT
TGAAGGACTTGTTCGTTTCGTCGCCGCCGTATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAA
GCCGACGATCATATTGGATCGGCCGGTTTCAAACCCGGTTCACCTAGACCGGTCTGGACCGGCTTCCGGTACAAATACTTACTTCAGAAAACTTGGCGGCCGGTTCTCGC
CGGAATCCCCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGCTTCTCAAATTCAAGCTCCTTTCGACGCACTGCGGCGTCGCTCAAAGTCCCACTTTAAGCCCTAGAACCAGTCCTCTCCTTCACCTACGCCGCCGTAAAAC
CACTCTGCGGATGCTTCTCACTCGGAATTTCAGCCGCCGGTCCCCTCGCCGCTGCGCCTTGCCGGAGAAGAACGTAGACGACCGTAAGGATTTGACTCGAGGCAACAAGT
TGAAGGACTTGTTCGTTTCGTCGCCGCCGTATGATGGAACCGACGCCAGGATTAACGAGACGGCGATCGCGGCTCCTATCCGGAACGTAACTCCGGTTTGTAAGAAGAAA
GCCGACGATCATATTGGATCGGCCGGTTTCAAACCCGGTTCACCTAGACCGGTCTGGACCGGCTTCCGGTACAAATACTTACTTCAGAAAACTTGGCGGCCGGTTCTCGC
CGGAATCCCCGAGTAA
Protein sequenceShow/hide protein sequence
MASLLKFKLLSTHCGVAQSPTLSPRTSPLLHLRRRKTTLRMLLTRNFSRRSPRRCALPEKNVDDRKDLTRGNKLKDLFVSSPPYDGTDARINETAIAAPIRNVTPVCKKK
ADDHIGSAGFKPGSPRPVWTGFRYKYLLQKTWRPVLAGIPE