; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24949 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24949
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionLIM domain-containing protein PLIM2c-like
Genome locationCarg_Chr06:7230104..7232068
RNA-Seq ExpressionCarg24949
SyntenyCarg24949
Gene Ontology termsGO:0051017 - actin filament bundle assembly (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0015629 - actin cytoskeleton (cellular component)
GO:0046872 - metal ion binding (molecular function)
GO:0051015 - actin filament binding (molecular function)
InterPro domainsIPR001781 - Zinc finger, LIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597154.1 LIM domain-containing protein PLIM2c, partial [Cucurbita argyrosperma subsp. sororia]6.2e-11699.51Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE

Query:  EDAA
        E+AA
Subjt:  EDAA

XP_008438078.1 PREDICTED: LIM domain-containing protein PLIM2c-like [Cucumis melo]3.4e-10692.61Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ
        GTQDKCAAC+KTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPE AE++EG   AQPQ
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ

Query:  AEE
        A+E
Subjt:  AEE

XP_011650764.2 LIM domain-containing protein PLIM2b isoform X2 [Cucumis sativus]7.6e-10692.61Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA TPPPE AE++EG   AQPQ
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ

Query:  AEE
        A+E
Subjt:  AEE

XP_022934048.1 LIM domain-containing protein PLIM2c-like [Cucurbita moschata]2.1e-116100Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE

Query:  EDAA
        EDAA
Subjt:  EDAA

XP_022975113.1 LIM domain-containing protein PLIM2c-like [Cucurbita maxima]1.5e-11499.02Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKP EKQND SRAPTKASAMFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE

Query:  EDAA
        EDAA
Subjt:  EDAA

TrEMBL top hitse value%identityAlignment
A0A0A0L4A1 Uncharacterized protein1.8e-10592.12Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSC KCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA TPPPE AE++EG   AQPQ
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ

Query:  AEE
        A+E
Subjt:  AEE

A0A1S3AW36 LIM domain-containing protein PLIM2c-like1.7e-10692.61Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQ +KP EKQND SRAP+K S+MFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ
        GTQDKCAAC+KTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPE AE++EG   AQPQ
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGG--AQPQ

Query:  AEE
        A+E
Subjt:  AEE

A0A6J1E9B9 LIM domain-containing protein PLIM2c-like2.0e-10491.26Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQND-PSRAPTKASAMF
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCK HFEQLFKESGNFSKNFQTSKP EKQND  SRAP+K S+MF
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQND-PSRAPTKASAMF

Query:  SGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDE--GGAQP
        SGTQDKC+ACSKTVYPLEKVTLEGECYHKNCFRCAHGGC+LTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPE+AE+DE  G A+ 
Subjt:  SGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDE--GGAQP

Query:  QAEEDA
        Q+EE A
Subjt:  QAEEDA

A0A6J1F6K2 LIM domain-containing protein PLIM2c-like1.0e-116100Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE

Query:  EDAA
        EDAA
Subjt:  EDAA

A0A6J1IIB7 LIM domain-containing protein PLIM2c-like7.4e-11599.02Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKP EKQND SRAPTKASAMFS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
        GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAE

Query:  EDAA
        EDAA
Subjt:  EDAA

SwissProt top hitse value%identityAlignment
O04193 LIM domain-containing protein WLIM2a4.1e-7063.35Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASA
        MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + 
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASA

Query:  MFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAA
        MFSGTQDKCA C+KTVYP+EKVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K+AT     AA
Subjt:  MFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAA

O80839 LIM domain-containing protein PLIM2a4.1e-7866.67Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK------ATTPPPEAAEDDEGG
        GTQDKCA C KTVYPLEKVT+EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN +        +PP +  + D+  
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK------ATTPPPEAAEDDEGG

Query:  AQPQAEEDAA
        + P+A+ED A
Subjt:  AQPQAEEDAA

Q1ECF5 LIM domain-containing protein PLIM2b5.7e-8072.02Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKTHFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F 
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK---ATTPPPEAAED
        GTQDKCAAC KTVYPLEK+ +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++     T PPE  ED
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK---ATTPPPEAAED

Q500W4 LIM domain-containing protein PLIM2c2.1e-8271.71Show/hide
Query:  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSG
        +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTHFEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSG
Subjt:  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSG

Query:  TQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEE
        TQDKCAAC KTVYPLEK+T+EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +T   +  E  E  A P  EE
Subjt:  TQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEE

Query:  --DAA
          DAA
Subjt:  --DAA

Q7F9R9 LIM domain-containing protein PLIM2b3.5e-6963.55Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAM
        MSFTGT DKC ACDKTV+ ++LL+ +G PYHK+CFKCSHCKG LSM SYS MDGVLYCKTHFEQLFKE+G+FSK F    P  +  D   +RAP+K  + 
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAM

Query:  FSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVL----------EAAANKKATTPPPEAA
        FSGTQDKCAAC KTVYPLEK+TLEGE YHK+CF+C+HGGC LT SSYAAL+GVLYCK HF QLFM KG+YNH+           E    ++   PPP+  
Subjt:  FSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVL----------EAAANKKATTPPPEAA

Query:  EDD
         +D
Subjt:  EDD

Arabidopsis top hitse value%identityAlignment
AT1G01780.1 GATA type zinc finger transcription factor family protein4.1e-8172.02Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKC  CDKTVYVV++LS+EG PYHKSCF+C+HCKGTL MS+YS MDGVLYCKTHFEQLFKESGNFSKNFQ  K   ++ + +R P+K S++F 
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK---ATTPPPEAAED
        GTQDKCAAC KTVYPLEK+ +EGEC+HK CFRCAHGGC LTHSSYA+LD VLYC+HHF QLFM KGNY HVL+AA +++     T PPE  ED
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK---ATTPPPEAAED

AT2G39900.1 GATA type zinc finger transcription factor family protein2.9e-7163.35Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASA
        MSFTGT  KC+AC+KTVY VELLS +G  YHK+CFKCSHCK  L +S+YS M+GV+YC+ HFEQLFKESG+FSKNFQ+ +KP   +  P  +R P++ + 
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQT-SKPPEKQNDP--SRAPTKASA

Query:  MFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAA
        MFSGTQDKCA C+KTVYP+EKVT+E +CYHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K+AT     AA
Subjt:  MFSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAA

AT2G45800.1 GATA type zinc finger transcription factor family protein2.9e-7966.67Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS
        MSFTGTLDKCKACDKTVYV++LL+LEGN YHKSCF+C+HCKGTL +S+YS MDGVLYCK HFEQLFKESGN+SKNFQ  K  +  +  +R P+K S+ FS
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFS

Query:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK------ATTPPPEAAEDDEGG
        GTQDKCA C KTVYPLEKVT+EGE YHK CFRC H GC LTHSSYA+L+GVLYCK HF QLF+ KG+YNHV +AAAN +        +PP +  + D+  
Subjt:  GTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKK------ATTPPPEAAEDDEGG

Query:  AQPQAEEDAA
        + P+A+ED A
Subjt:  AQPQAEEDAA

AT3G55770.1 GATA type zinc finger transcription factor family protein1.2e-6963.74Show/hide
Query:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAM
        MSFTGT  KCKAC+KTVY VELLS +G  YHKSCFKC+HCK  L +SSYS M+GVLYCK HFEQLFKESG+F+KNFQ+      ++ P  +R P++ +  
Subjt:  MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDP--SRAPTKASAM

Query:  FSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA
        FSGTQ+KCA CSKTVYP+EKVT+E + YHK+CF+C+HGGC ++ S+YAAL+G+LYCKHHFAQLF  KG+YNH++++A+ K++
Subjt:  FSGTQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKA

AT3G61230.1 GATA type zinc finger transcription factor family protein1.5e-8371.71Show/hide
Query:  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSG
        +FTGT DKCKACDKTVYV++L++LEG PYHKSCF+CSHC GTL + +YS MDGVLYCKTHFEQLFKESGNFSKNFQT+   EK ND ++AP + S+ FSG
Subjt:  SFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSG

Query:  TQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEE
        TQDKCAAC KTVYPLEK+T+EGE YHK CFRCAH GC LTHSSYAALDGVLYCK HF+QLF+ KGNYNHVL+AAAN + +T   +  E  E  A P  EE
Subjt:  TQDKCAACSKTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEE

Query:  --DAA
          DAA
Subjt:  --DAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCACCGGTACTTTGGATAAATGCAAGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCACAAGTCTTGCTTCAAATG
TAGCCATTGCAAGGGCACCCTTTCGATGAGTAGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCA
AGAATTTTCAAACTTCAAAGCCTCCTGAGAAACAAAATGATCCGTCGAGGGCTCCAACGAAAGCTTCGGCCATGTTCTCAGGAACTCAGGACAAATGTGCAGCCTGCTCA
AAGACGGTTTATCCATTGGAGAAGGTGACTCTTGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCGTCCTATGCTGC
CCTTGATGGAGTGCTGTACTGCAAGCACCACTTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGC
CTCCCGAGGCCGCCGAGGACGATGAGGGCGGAGCTCAGCCACAGGCGGAGGAGGACGCGGCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTTCCCTTCTCTCTCTGTCCCATTCCACTTAGCTTCTGCTTCTTTTTTCCTCTAATCTTGTCTGAGATCCCATCCTCAGACAACTTGGTAAACATTCCATTTGTTT
GTCTTTTGTTGTTGTTGTTCTTCGTGTTCTTCTTCGTGTTCTTCGTGTTCTTGTTTCGGTGTTCTTGTTTCGGTTCGAGATGTCGTTCACCGGTACTTTGGATAAATGCA
AGGCCTGTGACAAGACTGTTTATGTGGTCGAGTTGCTTTCCCTTGAAGGCAATCCTTACCACAAGTCTTGCTTCAAATGTAGCCATTGCAAGGGCACCCTTTCGATGAGT
AGCTACTCATGGATGGACGGTGTCCTCTACTGCAAGACTCATTTTGAGCAACTCTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCAAACTTCAAAGCCTCCTGAGAA
ACAAAATGATCCGTCGAGGGCTCCAACGAAAGCTTCGGCCATGTTCTCAGGAACTCAGGACAAATGTGCAGCCTGCTCAAAGACGGTTTATCCATTGGAGAAGGTGACTC
TTGAAGGGGAATGCTACCACAAGAACTGCTTTAGATGTGCTCATGGAGGGTGCCATTTGACACACTCGTCCTATGCTGCCCTTGATGGAGTGCTGTACTGCAAGCACCAC
TTTGCTCAGCTCTTCATGATCAAGGGCAACTACAACCATGTCCTTGAGGCTGCTGCAAACAAGAAGGCCACCACGCCGCCTCCCGAGGCCGCCGAGGACGATGAGGGCGG
AGCTCAGCCACAGGCGGAGGAGGACGCGGCCTGA
Protein sequenceShow/hide protein sequence
MSFTGTLDKCKACDKTVYVVELLSLEGNPYHKSCFKCSHCKGTLSMSSYSWMDGVLYCKTHFEQLFKESGNFSKNFQTSKPPEKQNDPSRAPTKASAMFSGTQDKCAACS
KTVYPLEKVTLEGECYHKNCFRCAHGGCHLTHSSYAALDGVLYCKHHFAQLFMIKGNYNHVLEAAANKKATTPPPEAAEDDEGGAQPQAEEDAA