; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24957 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24957
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCOP9 signalosome complex subunit 1-like
Genome locationCarg_Chr06:7271347..7273342
RNA-Seq ExpressionCarg24957
SyntenyCarg24957
Gene Ontology termsGO:0000502 - proteasome complex (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0008180 - COP9 signalosome (cellular component)
InterPro domainsIPR000717 - Proteasome component (PCI) domain
IPR019585 - 26S proteasome regulatory subunit Rpn7/COP9 signalosome complex subunit 1
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597162.1 COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. sororia]2.7e-70100Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

KAG7028632.1 COP9 signalosome complex subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-70100Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

XP_022939807.1 COP9 signalosome complex subunit 1-like [Cucurbita moschata]5.9e-7099.27Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRS+LLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

XP_022974152.1 COP9 signalosome complex subunit 1-like [Cucurbita maxima]2.7e-70100Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

XP_023539767.1 COP9 signalosome complex subunit 1-like [Cucurbita pepo subsp. pepo]2.7e-70100Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

TrEMBL top hitse value%identityAlignment
A0A0A0L4A8 PCI domain-containing protein1.4e-6998.54Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV GLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQ+GSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

A0A1S3AV75 COP9 signalosome complex subunit 11.4e-6998.54Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV GLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQ+GSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

A0A6J1D2A2 COP9 signalosome complex subunit 14.1e-6998.54Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLK NLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSV GLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

A0A6J1FHU8 COP9 signalosome complex subunit 1-like2.9e-7099.27Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRS+LLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

A0A6J1IK85 COP9 signalosome complex subunit 1-like1.3e-70100Show/hide
Query:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
        HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF
Subjt:  HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATF

Query:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
        QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI
Subjt:  QRVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRKI

SwissProt top hitse value%identityAlignment
P45432 COP9 signalosome complex subunit 17.8e-5781.34Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV+GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSR
        +VLQ G+EFDR+VR+MLLRANL+KH+Y+ R   +
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSR

Q13098 COP9 signalosome complex subunit 18.7e-3251.85Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V  LE EL  LI    I AR+DSH+KILYAR  DQR+ TF+
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK
        + L  G EF R  ++M+LRA ++++  + +   R+
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK

Q54QX3 COP9 signalosome complex subunit 16.4e-3557.94Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        Y SCL YL  +KP LLLDIHL+ HVE LY +IR KAL+QY  P+ SVD+++MA+AF T+VT LEKE+  LI  N+IQARIDSHNK LYAR ADQR  TF+
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHD
        + +Q GS+F     S+LLR  ++ ++
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHD

Q6NRT5 COP9 signalosome complex subunit 13.0e-3252.59Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D++ MA AF T+V+ LE EL  LI    I ARIDSH+KILYAR  DQR+ TF+
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK
        + LQ G EF R  ++M+LRA ++++  + +   R+
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK

Q99LD4 COP9 signalosome complex subunit 16.6e-3252.59Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        YASCL  L  +K NLLLD++L  HV TLY QIR++ALIQY  P+VS D+H MA AF T+V  LE EL  LI    I ARIDSH+KILYAR  DQR+ TF+
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK
        + L  G EF R  ++M+LRA ++++  + +   R+
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSRK

Arabidopsis top hitse value%identityAlignment
AT3G61140.1 26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain5.5e-5881.34Show/hide
Query:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ
        YASCL+YL +LK NLLLDIHLHDHV+TLYDQIR KALIQYTLPFVSVDL  MA+AFKTSV+GLEKELE LIT+NQIQARIDSHNKILYARHADQRNATFQ
Subjt:  YASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQ

Query:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSR
        +VLQ G+EFDR+VR+MLLRANL+KH+Y+ R   +
Subjt:  RVLQTGSEFDREVRSMLLRANLIKHDYNQRGGSR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGC
TCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCA
ATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTC
GATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGA
mRNA sequenceShow/hide mRNA sequence
CATTATGCATCATGCCTGGACTACCTTGGGAATCTTAAACCCAACTTATTGCTTGACATTCATTTACATGACCATGTTGAGACGCTCTACGATCAAATACGCCACAAGGC
TCTCATCCAATACACTCTCCCATTTGTATCTGTTGATCTCCACATGATGGCTAATGCTTTTAAAACGAGTGTTACTGGTCTTGAGAAAGAGCTGGAGACACTAATCACCA
ATAATCAAATCCAGGCCAGAATTGACTCACACAATAAAATTCTTTATGCCCGACATGCGGATCAGAGGAACGCAACCTTCCAAAGGGTTCTACAGACAGGGAGCGAGTTC
GATCGTGAAGTTCGATCGATGCTATTGAGAGCAAATCTTATCAAACACGACTATAACCAACGAGGTGGTTCCAGGAAAATCTGATATATTTTTTTAAATCTGGGCTGCTG
GTAGGACCATGTTTTTCTTCTTCATTGGCTTTCATTGTGAGCCATGAGAGAGGTTGCATAGAATCAAAAATGAGATTAAAATTGGAAGTTCCATGAGAGGTGGTGGATTG
TTAGAACACATACATACTGCTTGCTGGCTGCTGGTTTTGTGAATACTGATTTTTCTCAGTTGCAGTTCTTGATTCTTCCAGTTTTTCCTTACAGATTCCAGGGAAACATC
TTCAACTTTGGCTGTAAGTTGAATATTCCAAGTAATGCTAGTCTCTGTCCTTTGTTTTTTTC
Protein sequenceShow/hide protein sequence
HYASCLDYLGNLKPNLLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLHMMANAFKTSVTGLEKELETLITNNQIQARIDSHNKILYARHADQRNATFQRVLQTGSEF
DREVRSMLLRANLIKHDYNQRGGSRKI