CuGenDBv2

Gene ID	Carg24968
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein CROWDED NUCLEI 2-like
Genome location	Carg_Chr04:12545954..12546695
RNA-Seq Expression	Carg24968
Synteny	Carg24968
Gene Ontology terms	GO:0006997 - nucleus organization (biological process) GO:0005652 - nuclear lamina (cellular component)
InterPro domains	IPR040418 - Protein crowded nuclei

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6601703.1 Succinate dehydrogenase assembly factor 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-50

100

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

KAG7032454.1 Protein CROWDED NUCLEI 2, partial [Cucurbita argyrosperma subsp. argyrosperma]

2.6e-50

100

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

XP_022930035.1 protein CROWDED NUCLEI 2-like [Cucurbita moschata]

5.4e-48

97.41

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGLVLLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR DNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

XP_022994499.1 protein CROWDED NUCLEI 2-like [Cucurbita maxima]

1.5e-45

93.97

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+LLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR D LKKALAAEKQHVSSLKKALCEAKEE AEIELTSQKKLADANALIYEI EKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

XP_023530686.1 protein CROWDED NUCLEI 2-like [Cucurbita pepo subsp. pepo]

1.6e-47

96.55

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGLVLLEKEACASKC  LEQ+LAETVEIFKRERSAHFIALSEVETR DNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

TrEMBL top hits

e value

%identity

Alignment

A0A5D3BM77 Protein CROWDED NUCLEI 3

5.1e-36

81.03

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+  A K  QLEQDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQHVSSLKK+L E  EERAEI+LTSQKKLADANAL++ IEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LEL+KKL AAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

A0A6J1EPS4 protein CROWDED NUCLEI 1-like isoform X1

7.1e-38

82.76

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        +GL+LLEK+  ASK  QL QDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQHVSSLKKALCE KEERAEI+LTSQKKLADANAL++ IEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        L+L+KKL AAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

A0A6J1EVX0 protein CROWDED NUCLEI 2-like

2.6e-48

97.41

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGLVLLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR DNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

A0A6J1K004 protein CROWDED NUCLEI 1-like isoform X1

1.9e-38

83.62

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        +GL+LLEK+  ASK  QL QDLAET EIFKRE+SAH IALSEVETR DNLKKALAAEKQHVSSLKKALCE KEERAEI+LTSQKKLADANAL++ IEEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LEL+KKL AAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

A0A6J1K308 protein CROWDED NUCLEI 2-like

7.1e-46

93.97

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+LLEKEACASKC QLEQ LAETVEIFKRERSAHFIALSEVETR D LKKALAAEKQHVSSLKKALCEAKEE AEIELTSQKKLADANALIYEI EKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LELEKKLYAAEAKLAE
Subjt:  LELEKKLYAAEAKLAE

SwissProt top hits

e value

%identity

Alignment

A0A166B1A6 Nuclear matrix constituent protein 1

6.9e-22

52.59

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+   SK  +L+Q   ET +  K+E+ AH IA+S+ E R +NL KAL  EKQ V  L+KAL + + + AEI+ TS  KLA+A+ALI ++EEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LE+E KL++A+AKLAE
Subjt:  LELEKKLYAAEAKLAE

F4HRT5 Protein CROWDED NUCLEI 1

2.2e-20

50.86

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+  +S+   L+Q   E  E  K+ER+AH IA+++VE R + L+KAL  EKQ    L+KAL E + E AEI+ T+  KL +ANAL+  +EEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LE+E KL A +AKLAE
Subjt:  LELEKKLYAAEAKLAE

I0J0E7 Nuclear matrix constituent protein 1

1.5e-21

52.59

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+  +S   +++  LAE  EI KRE++AH IAL+E E R DNL+KAL  EKQ V+ L+KAL E + E AE++ T++KK+ +A AL   IEEK 
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        L+ E+KL++A+AKLAE
Subjt:  LELEKKLYAAEAKLAE

Q0DY81 Nuclear matrix constituent protein 1a

8.4e-20

49.14

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+   +K  ++ Q L +  EI KRE++AH  A+SE E R ++++KAL  EKQ V+ L+KAL E + E AE++  S+KK+ DA +L   +EEK 
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LE+E KL+AA+AKLAE
Subjt:  LELEKKLYAAEAKLAE

Q9SAF6 Protein CROWDED NUCLEI 2

2.2e-20

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+E +   SK  QL Q   E  EI KRE+S+H  AL+ VE R +NL+KAL  EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
         ++E K+Y+AE+KLAE
Subjt:  LELEKKLYAAEAKLAE

Arabidopsis top hits

e value

%identity

Alignment

AT1G13220.1 nuclear matrix constituent protein-related

1.6e-21

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+E +   SK  QL Q   E  EI KRE+S+H  AL+ VE R +NL+KAL  EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
         ++E K+Y+AE+KLAE
Subjt:  LELEKKLYAAEAKLAE

AT1G13220.2 nuclear matrix constituent protein-related

1.6e-21

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+E +   SK  QL Q   E  EI KRE+S+H  AL+ VE R +NL+KAL  EKQ V  L+KAL E +EE ++I L+S+ KL +ANAL+  +  +S
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
         ++E K+Y+AE+KLAE
Subjt:  LELEKKLYAAEAKLAE

AT1G67230.1 little nuclei1

1.6e-21

50.86

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+  +S+   L+Q   E  E  K+ER+AH IA+++VE R + L+KAL  EKQ    L+KAL E + E AEI+ T+  KL +ANAL+  +EEKS
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
        LE+E KL A +AKLAE
Subjt:  LELEKKLYAAEAKLAE

AT1G68790.1 little nuclei3

7.1e-14

39.13

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+L+EK+   S   +L+Q   E +E+ KRE++++ I L+E + R +NL+KAL  EKQ V+ L+  L   + E + ++ TS+ KL +ANAL+  ++EK+
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLA
        LE++++   AE K +
Subjt:  LELEKKLYAAEAKLA

AT5G65770.1 little nuclei4

8.1e-10

35.34

Show/hide

Query:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS
        MGL+LLEK   +S+  +++  + E+     RE+SA+  AL+E + R ++LKK +   K+ +SSL+K L E + E AE ++++   +++A+ +I +  +K 
Subjt:  MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKS

Query:  LELEKKLYAAEAKLAE
         + E K+ AAEA  AE
Subjt:  LELEKKLYAAEAKLAE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGACTTGTTTTGCTAGAGAAGGAAGCGTGTGCTTCAAAGTGTGTCCAACTAGAACAAGATTTAGCAGAAACGGTGGAAATCTTCAAACGTGAACGATCAGCACATTT
CATTGCATTATCTGAAGTTGAAACGAGGACGGATAATTTGAAGAAAGCACTAGCTGCTGAGAAGCAACATGTGTCTAGTCTTAAAAAGGCTTTATGTGAAGCAAAGGAGG
AACGTGCAGAAATCGAACTTACTTCTCAGAAAAAGTTGGCTGATGCAAATGCTTTGATATATGAAATTGAGGAGAAATCTTTGGAGTTGGAGAAAAAATTGTATGCTGCC
GAAGCGAAGCTTGCTGAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGLVLLEKEACASKCVQLEQDLAETVEIFKRERSAHFIALSEVETRTDNLKKALAAEKQHVSSLKKALCEAKEERAEIELTSQKKLADANALIYEIEEKSLELEKKLYAA
EAKLAE

Carg24968 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome