; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg24976 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg24976
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionQueuine tRNA-ribosyltransferase accessory subunit 2
Genome locationCarg_Chr15:165118..169576
RNA-Seq ExpressionCarg24976
SyntenyCarg24976
Gene Ontology termsGO:0006400 - tRNA modification (biological process)
GO:0016763 - transferase activity, transferring pentosyl groups (molecular function)
InterPro domainsIPR002616 - tRNA-guanine(15) transglycosylase-like
IPR036511 - Queuine tRNA-ribosyltransferase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015882.1 hypothetical protein SDJN02_20985, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-138100Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDA
        MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDA
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDA

Query:  TNKFGASFETTRGHRSTGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLSGCFTRGNAPHDCGLDFRHNT
        TNKFGASFETTRGHRSTGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLSGCFTRGNAPHDCGLDFRHNT
Subjt:  TNKFGASFETTRGHRSTGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLSGCFTRGNAPHDCGLDFRHNT

Query:  HHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS
        HHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS
Subjt:  HHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS

XP_004138668.1 queuine tRNA-ribosyltransferase accessory subunit 2 [Cucumis sativus]1.2e-6242.86Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------GICHIRKRTKLLA--NGCRASVARDS
        MKFAVKAW NGKARTGFLQL +C +A++TPALLLSTRKGLP+F SPDLLPSLPSPDSHLLQFSPLH         I +I     LL       A+VARDS
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------GICHIRKRTKLLA--NGCRASVARDS

Query:  VQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEERQDVL
        VQ LP+CDATNKFGASFETT G R                                                     STGGAVFGAIVGGND+EERQ   
Subjt:  VQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEERQDVL

Query:  RSLNKQFLVGYWIGGFGLGESTDERPALLDAIT-------------------------------------------------------------------
          + K+ + GYWIGGFG GES DERP+LLDA+T                                                                   
Subjt:  RSLNKQFLVGYWIGGFGLGESTDERPALLDAIT-------------------------------------------------------------------

Query:  ------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS
              +R ++       +L GC        T+    H   +           HNT+HYLGFF+SIREAIK GKFQQFHQKFVE RRNHL L T AL S
Subjt:  ------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLALGS

XP_008441158.1 PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis melo]6.6e-6442.64Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+LQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSVQCLP+CDATNKFGASFETT G R                                                     STGGAVFGAIVGGND+EER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--
        Q     + K+ + GYWIGGFG GES DERP+LLDA+T  +                                          L   L G   +  A H  
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--

Query:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
        D  +D                                                    HNTHHYLGFFRSIREAIK GKFQQFHQKFVE RRNHL L   A
Subjt:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  L
        L
Subjt:  L

XP_022152510.1 queuine tRNA-ribosyltransferase accessory subunit 2-like [Momordica charantia]5.0e-6443.18Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTG LQL +C +A+ETPALLLSTRKGL NF SPDLLPSLPSPDSHLLQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSV CLP+CDA NKFGASFETT G R                                                     STGGAVFGAIVGGNDVEER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------
        Q     + K+ + GYWIGGFGLGES DERPALLDA+T                                                               
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------

Query:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
                  +R  L       +L GC        T+    H   +           HNTHHYLGFFRSIREAI+AGKFQQ+HQKFVEVRRNHLA   LA
Subjt:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  LGS
        + S
Subjt:  LGS

XP_038885042.1 queuine tRNA-ribosyltransferase accessory subunit 2-like [Benincasa hispida]1.6e-6543.64Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTGFLQL +C +A+ETPALLLSTRKGLPNF SPDLLPSLPSPDSHLLQFSPLH              G+ H+      L      +V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSVQCLP+CDATNKFGASFETT G R                                                     STGGAVFGAIVGGND+EER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--
        Q     + K+ + GYWIGGFG GES +ERPALLDA+T  +                                          L   L+G   +  A H  
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--

Query:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
        D   D                                                    HNTHHYLGFFRSIREAIKAGKF+QFHQ FVEVRRNHLAL T A
Subjt:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A1S3B3I7 Queuine tRNA-ribosyltransferase accessory subunit 23.2e-6442.64Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+LQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSVQCLP+CDATNKFGASFETT G R                                                     STGGAVFGAIVGGND+EER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--
        Q     + K+ + GYWIGGFG GES DERP+LLDA+T  +                                          L   L G   +  A H  
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRI------------------------------------------LLVMLSGCFTRGNAPH--

Query:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
        D  +D                                                    HNTHHYLGFFRSIREAIK GKFQQFHQKFVE RRNHL L   A
Subjt:  DCGLDFR--------------------------------------------------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  L
        L
Subjt:  L

A0A5A7T128 Queuine tRNA-ribosyltransferase accessory subunit 27.4e-5353.16Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTGFLQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSH+LQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSVQCLP+CDATNKFGASFETT G R                                                     STGGAVFGAIVGGND+EER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT
        Q     + K+ + GYWIGGFG GES DERP+LLDA+T
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT

A0A6J1DE50 Queuine tRNA-ribosyltransferase accessory subunit 22.4e-6443.18Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW NGKARTG LQL +C +A+ETPALLLSTRKGL NF SPDLLPSLPSPDSHLLQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSV CLP+CDA NKFGASFETT G R                                                     STGGAVFGAIVGGNDVEER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------
        Q     + K+ + GYWIGGFGLGES DERPALLDA+T                                                               
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------

Query:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
                  +R  L       +L GC        T+    H   +           HNTHHYLGFFRSIREAI+AGKFQQ+HQKFVEVRRNHLA   LA
Subjt:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  LGS
        + S
Subjt:  LGS

A0A6J1HIG1 Queuine tRNA-ribosyltransferase accessory subunit 26.6e-6242.57Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------GICHIRKRTKLLA--NGCRASVARDS
        MKFAVKAW N KARTG +QL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSHLLQFSPLH         I  I     LL       A+VARDS
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------GICHIRKRTKLLA--NGCRASVARDS

Query:  VQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEERQDVL
        VQCLP+C+A+NKFGASFETT G R                                                     STGGA+FGAIVGGND+EERQ   
Subjt:  VQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEERQDVL

Query:  RSLNKQFLVGYWIGGFGLGESTDERPALLDAIT-------------------------------------------------------------------
          + K+ + GYWIGGFGLGES DERPALLDA+T                                                                   
Subjt:  RSLNKQFLVGYWIGGFGLGESTDERPALLDAIT-------------------------------------------------------------------

Query:  ------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLAL
              +R  L       +L GC        T+    H   +           HNTHHYLGFFRSIREAIKAGKFQQ+HQKFVE RRNHLAL   A+
Subjt:  ------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLAL

A0A6J1JNK0 Queuine tRNA-ribosyltransferase accessory subunit 21.3e-6242.18Show/hide
Query:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV
        MKFAVKAW N KARTG LQL +C +A++TPALLLST KGLPNF SPDLLPSLPSPDSHLLQFSPLH              G+ H+      L     A+V
Subjt:  MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHL-------------GICHIRKRTKLLANGCRASV

Query:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER
        ARDSVQCLP+C+A+NKFGASFETT G R                                                     STGGA+FGAIVGGND+EER
Subjt:  ARDSVQCLPKCDATNKFGASFETTRGHR-----------------------------------------------------STGGAVFGAIVGGNDVEER

Query:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------
        Q     + K+ + GYWIGGFGLGES DERPALLDA+T                                                               
Subjt:  QDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAIT---------------------------------------------------------------

Query:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA
                  +R  L       +L GC        T+    H   +           HNTHHYLGFFRSIREAIKAGKFQQ+HQKFVE RRNHLAL   A
Subjt:  ----------VRILLV------MLSGC-------FTRGNAPHDCGLDFR--------HNTHHYLGFFRSIREAIKAGKFQQFHQKFVEVRRNHLALATLA

Query:  LGS
        + S
Subjt:  LGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTCGCGGTGAAGGCATGGGGCAACGGCAAGGCGCGCACCGGATTTCTACAGCTCGTCCACTGCGCTTCCGCCATGGAGACTCCCGCGTTACTTCTCTCTACTCG
CAAAGGACTGCCTAATTTCAGCTCTCCTGATCTTCTTCCCTCTCTCCCTTCGCCTGATTCTCACCTCCTCCAATTCAGTCCTCTTCACTTGGGAATATGTCATATACGGA
AAAGGACGAAATTACTGGCGAATGGATGTAGAGCGTCTGTAGCAAGGGATTCTGTTCAGTGCCTTCCAAAATGTGATGCTACCAATAAGTTTGGAGCATCTTTTGAGACT
ACTAGGGGTCATCGTTCGACAGGTGGAGCTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGTCAAGATGTGCTGCGGAGTTTGAACAAACAATTTTTGGT
AGGTTACTGGATTGGAGGTTTTGGGCTTGGAGAGAGCACGGATGAGCGTCCTGCCCTTCTTGATGCCATTACGGTAAGGATTTTGCTTGTAATGCTGTCAGGATGTTTTA
CCAGAGGAAATGCCCCGCATGACTGTGGCTTGGACTTCAGACATAACACTCATCATTATCTAGGATTCTTTCGATCAATCCGAGAAGCAATCAAGGCTGGAAAATTTCAG
CAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCCTTGGCAACATTGGCACTCGGCTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTCGCGGTGAAGGCATGGGGCAACGGCAAGGCGCGCACCGGATTTCTACAGCTCGTCCACTGCGCTTCCGCCATGGAGACTCCCGCGTTACTTCTCTCTACTCG
CAAAGGACTGCCTAATTTCAGCTCTCCTGATCTTCTTCCCTCTCTCCCTTCGCCTGATTCTCACCTCCTCCAATTCAGTCCTCTTCACTTGGGAATATGTCATATACGGA
AAAGGACGAAATTACTGGCGAATGGATGTAGAGCGTCTGTAGCAAGGGATTCTGTTCAGTGCCTTCCAAAATGTGATGCTACCAATAAGTTTGGAGCATCTTTTGAGACT
ACTAGGGGTCATCGTTCGACAGGTGGAGCTGTTTTTGGAGCTATTGTTGGAGGCAATGATGTAGAAGAACGTCAAGATGTGCTGCGGAGTTTGAACAAACAATTTTTGGT
AGGTTACTGGATTGGAGGTTTTGGGCTTGGAGAGAGCACGGATGAGCGTCCTGCCCTTCTTGATGCCATTACGGTAAGGATTTTGCTTGTAATGCTGTCAGGATGTTTTA
CCAGAGGAAATGCCCCGCATGACTGTGGCTTGGACTTCAGACATAACACTCATCATTATCTAGGATTCTTTCGATCAATCCGAGAAGCAATCAAGGCTGGAAAATTTCAG
CAATTTCATCAGAAATTTGTTGAGGTGAGGCGCAATCATCTAGCCTTGGCAACATTGGCACTCGGCTCATGACGAGCTCGTCAAACAAGTAATTTTAATATTGAAAATAA
Protein sequenceShow/hide protein sequence
MKFAVKAWGNGKARTGFLQLVHCASAMETPALLLSTRKGLPNFSSPDLLPSLPSPDSHLLQFSPLHLGICHIRKRTKLLANGCRASVARDSVQCLPKCDATNKFGASFET
TRGHRSTGGAVFGAIVGGNDVEERQDVLRSLNKQFLVGYWIGGFGLGESTDERPALLDAITVRILLVMLSGCFTRGNAPHDCGLDFRHNTHHYLGFFRSIREAIKAGKFQ
QFHQKFVEVRRNHLALATLALGS