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Carg25008 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25008
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription termination factor MTEF18, mitochondrial-like
Genome locationCarg_Chr03:294049..295704
RNA-Seq ExpressionCarg25008
SyntenyCarg25008
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003690 - double-stranded DNA binding (molecular function)
InterPro domainsIPR003690 - Transcription termination factor, mitochondrial/chloroplastic
IPR038538 - MTERF superfamily, mitochondrial/chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595584.1 Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]8.5e-5647.92Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGS M+QI SVF+QFP++RVGKF+SNIR CLLFFNEI+MG+Q+I +LF+SHPLLLGS TLKK N LL I NVGKK LC+FILENPEELKNW+ GTR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFL----------------------------------------------------------------------------GSLLGS-
        PD GE +RS+QQK +FL                                                                             SL+ S 
Subjt:  PDTGEAIRSRQQKIRFL----------------------------------------------------------------------------GSLLGS-

Query:  --------------QCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREI
                        YSWLKE+GAADP L L T+V CSEN FL++YVNHHPE MEVW+NLKREI
Subjt:  --------------QCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREI

KAG6603176.1 hypothetical protein SDJN03_03785, partial [Cucurbita argyrosperma subsp. sororia]3.0e-9381.45Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEI+MGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKK LCRFILENPEELKNWKHGTRITPL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFL-------------------------------------GSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEA
        PDTGEAIRSRQQKIRFL                                     GSLLGSQCYSWLKEQGAADPAL LSTIVPCSENTFLRRYVNHHP A
Subjt:  PDTGEAIRSRQQKIRFL-------------------------------------GSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEA

Query:  MEVWQNLKREIGLNSFTSRAR
        MEVWQNLKREIGLNSFTSRAR
Subjt:  MEVWQNLKREIGLNSFTSRAR

KAG7027564.1 Transcription termination factor MTEF18, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma]8.5e-5647.92Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGS M+QI SVF+QFP++RVGKF+SNIR CLLFFNEI+MG+Q+I +LF+SHPLLLGS TLKK N LL I NVGKK LC+FILENPEELKNW+ GTR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFL----------------------------------------------------------------------------GSLLGS-
        PD GE +RS+QQK +FL                                                                             SL+ S 
Subjt:  PDTGEAIRSRQQKIRFL----------------------------------------------------------------------------GSLLGS-

Query:  --------------QCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREI
                        YSWLKE+GAADP L L T+V CSEN FL++YVNHHPE MEVW+NLKREI
Subjt:  --------------QCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREI

KAG7033488.1 hypothetical protein SDJN02_03210, partial [Cucurbita argyrosperma subsp. argyrosperma]4.6e-102100Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
        PDTGEAIRSRQQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
Subjt:  PDTGEAIRSRQQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR

XP_022966246.1 transcription termination factor MTEF18, mitochondrial-like [Cucurbita maxima]1.5e-5547.64Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGS M+QI SVF+QFP++RVGKFVSNIR CLLFFNEI+M +Q+I +LF+SHPLLLGS TLKK N LL I NVGKK LC+FILENPEELKNWK  TR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------
        PD GE +RS+QQK +FL  L                                                                                
Subjt:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------

Query:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
                   L    YSWLKEQGAADP L L TIV CSENTFL++YVNHHP+ MEVW+NLKREI  +S  S A+
Subjt:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR

TrEMBL top hitse value%identityAlignment
A0A5D3DAD9 Transcription termination factor MTEF187.3e-5346.38Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MG SMIQICSVF+QFP+IRVGKFVSN+RLCLLFFNEI+MG+QEI +LF+SHPLLLG  TLKK + LL+  N GKK +C+FILENPEELKNWK GTR+  L
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIR--SRQQKIRFLGSL------------------------------------------------------------------------------
        PD G   +  + QQKI+FL  L                                                                              
Subjt:  PDTGEAIR--SRQQKIRFLGSL------------------------------------------------------------------------------

Query:  -------------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRA
                     L    YSWLK+QG ADP L LST+V CSENTFLR+YVNHHP  MEVW+NLKREI  +S  S A
Subjt:  -------------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRA

A0A6J1DXM2 transcription termination factor MTEF18, mitochondrial-like1.0e-5446.86Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGSSMIQICS+F+QFP+IRVGKFVSNIR CL FFNEI+MG++EI +L +S PLLLGS+TLKK N LL   NVGKK LC+FILENPEELKNWK GTR+TPL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------
        P  GE  RS+QQK +FL  L                                                                                
Subjt:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------

Query:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFT
                   L    Y+WLKEQG ADP L LSTI+ CSENTFLR+YVNHHP+ +E WQ LKREI  +S +
Subjt:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFT

A0A6J1EEL8 transcription termination factor MTEF18, mitochondrial-like isoform X13.9e-5446.55Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGSSM+QI SVF+QFP++RVGKFVSNIR CLLFFNEI+MG+Q+I +LF+SHPLLLGS TLKK N LL I NVGKK L + ILENPEELKNW+ GTR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------
        PD GE  RS+QQK +FL  L                                                                                
Subjt:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------

Query:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
                   L    YSWLKEQGAADP L L T+V CSEN FL++YV+HHP+ MEVW+NLKREI  +S  S A+
Subjt:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR

A0A6J1EHC5 transcription termination factor MTEF18, mitochondrial-like isoform X23.9e-5446.55Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGSSM+QI SVF+QFP++RVGKFVSNIR CLLFFNEI+MG+Q+I +LF+SHPLLLGS TLKK N LL I NVGKK L + ILENPEELKNW+ GTR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------
        PD GE  RS+QQK +FL  L                                                                                
Subjt:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------

Query:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
                   L    YSWLKEQGAADP L L T+V CSEN FL++YV+HHP+ MEVW+NLKREI  +S  S A+
Subjt:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR

A0A6J1HNT9 transcription termination factor MTEF18, mitochondrial-like7.0e-5647.64Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        MGS M+QI SVF+QFP++RVGKFVSNIR CLLFFNEI+M +Q+I +LF+SHPLLLGS TLKK N LL I NVGKK LC+FILENPEELKNWK  TR+ PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------
        PD GE +RS+QQK +FL  L                                                                                
Subjt:  PDTGEAIRSRQQKIRFLGSL--------------------------------------------------------------------------------

Query:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR
                   L    YSWLKEQGAADP L L TIV CSENTFL++YVNHHP+ MEVW+NLKREI  +S  S A+
Subjt:  -----------LGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G19650.1 Mitochondrial transcription termination factor family protein2.3e-0640.43Show/hide
Query:  YSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR
        Y WL+E+ AA P L  STI+ C +  F++ +VN HPE   +W+++ +
Subjt:  YSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR

AT5G06810.1 Mitochondrial transcription termination factor family protein8.3e-2547.86Show/hide
Query:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL
        +G+S  ++CS+F +FP I+V K VSN+R C LF  EI M   EI  +F+SH   LGS  LKK + LLV    GK  +C+ I ENPEE+K W  G++I PL
Subjt:  MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPL

Query:  PDTGEAIRSRQQKIRFL
        P T   I S+  K +FL
Subjt:  PDTGEAIRSRQQKIRFL

AT5G06810.1 Mitochondrial transcription termination factor family protein1.6e-0738.1Show/hide
Query:  RQQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR
        ++ K+RF         +SWL+++G ADP L +STI+ CS+  F  R+VN HP+  +  ++LK+
Subjt:  RQQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR

AT5G45113.1 mitochondrial transcription termination factor-related / mTERF-related1.5e-0540.43Show/hide
Query:  YSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR
        Y WL+E+ A  P L L T+V  S    +  +VN HPE    W+N+K+
Subjt:  YSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCCTCAATGATCCAGATATGTTCTGTGTTCGTGCAATTCCCTCGAATCCGAGTTGGTAAGTTTGTTTCGAATATAAGGCTATGCCTTTTGTTTTTCAATGAAAT
CAACATGGGTATGCAGGAGATACAACACCTTTTCCAGTCTCATCCCTTGCTATTGGGATCATTTACTCTGAAAAAGAAGAACTGCTTACTCGTTATCTCGAATGTTGGGA
AGAAATGTCTTTGTCGATTTATCTTAGAGAATCCAGAGGAATTGAAGAACTGGAAGCACGGGACAAGAATTACACCGCTACCAGATACTGGAGAGGCGATTAGATCAAGG
CAACAGAAAATTCGATTCTTAGGGTCACTCTTAGGTTCTCAATGTTATAGTTGGCTCAAGGAACAAGGAGCAGCCGACCCTGCATTGGTGTTGAGCACCATCGTTCCGTG
TTCGGAAAATACATTTCTAAGACGGTATGTGAATCATCATCCCGAGGCCATGGAAGTTTGGCAGAATTTAAAGAGAGAAATAGGTTTGAATTCTTTTACATCTCGTGCTC
GTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATCCTCAATGATCCAGATATGTTCTGTGTTCGTGCAATTCCCTCGAATCCGAGTTGGTAAGTTTGTTTCGAATATAAGGCTATGCCTTTTGTTTTTCAATGAAAT
CAACATGGGTATGCAGGAGATACAACACCTTTTCCAGTCTCATCCCTTGCTATTGGGATCATTTACTCTGAAAAAGAAGAACTGCTTACTCGTTATCTCGAATGTTGGGA
AGAAATGTCTTTGTCGATTTATCTTAGAGAATCCAGAGGAATTGAAGAACTGGAAGCACGGGACAAGAATTACACCGCTACCAGATACTGGAGAGGCGATTAGATCAAGG
CAACAGAAAATTCGATTCTTAGGGTCACTCTTAGGTTCTCAATGTTATAGTTGGCTCAAGGAACAAGGAGCAGCCGACCCTGCATTGGTGTTGAGCACCATCGTTCCGTG
TTCGGAAAATACATTTCTAAGACGGTATGTGAATCATCATCCCGAGGCCATGGAAGTTTGGCAGAATTTAAAGAGAGAAATAGGTTTGAATTCTTTTACATCTCGTGCTC
GTTAG
Protein sequenceShow/hide protein sequence
MGSSMIQICSVFVQFPRIRVGKFVSNIRLCLLFFNEINMGMQEIQHLFQSHPLLLGSFTLKKKNCLLVISNVGKKCLCRFILENPEELKNWKHGTRITPLPDTGEAIRSR
QQKIRFLGSLLGSQCYSWLKEQGAADPALVLSTIVPCSENTFLRRYVNHHPEAMEVWQNLKREIGLNSFTSRAR