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Carg25025 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25025
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18
Genome locationCarg_Chr11:6272146..6273942
RNA-Seq ExpressionCarg25025
SyntenyCarg25025
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588487.1 hypothetical protein SDJN03_17052, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6595.21Show/hide
Query:  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVA
        S +  PLAGTLHRRSSFVSAATSRQHQ RLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALRPSMESTRDVA
Subjt:  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVA

Query:  AAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL
        AAAAAKIGKLLKGIPAVCVHLKRE KYHGKIKAVIDSVREAGIKLL
Subjt:  AAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL

KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.8e-4388.79Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMESTRDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

KAG7022317.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-76100Show/hide
Query:  NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALR
        NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALR
Subjt:  NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALR

Query:  PSMESTRDVAAAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL
        PSMESTRDVAAAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL
Subjt:  PSMESTRDVAAAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]1.8e-4388.79Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMESTRDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]4.9e-4489.66Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+A AASSQEKALRPSMESTRDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        IKAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L182.9e-4286.21Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK
        MVIPPP++PPRL QYLKPYVLKMHFTNK+VSAQVIHSETATVA AASSQEKALR SMESTRDV  AAAAKIGK      LLKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152862.2e-4286.21Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK
        MVIPPPVRP R+TQYLKPYVLKMHFTNKYVSAQV+HSETATVA AASSQEKALR SMESTRDV  AAAAKIGK      LLKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620258.9e-4488.79Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEKALR SMESTRDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691422.4e-4489.66Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETAT+A AASSQEKALRPSMESTRDV  AAA KIGK      LLKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        IKAVIDSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679402.6e-4387.93Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK
        MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVA AASSQEK LR SMESTRDV  AAAAKIGKL      LKGIPAVCVHLKRE KYHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKL------LKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAV+DSVREAGIKLL
Subjt:  IKAVIDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A7MWH4 50S ribosomal protein L187.1e-0640.43Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI +  + V  AAS+ EKA+R  ++ T +V AA A  +GK      L KG+ AV    +   +YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK

A8IAP8 50S ribosomal protein L186.4e-0740.43Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK
        L +H T+K++ AQ+I        +AASS EK LR S+++  DV AA A  IGKL+      KG+ AV V  +  + YHG++KA+ +  RE G++
Subjt:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK

B7VLE1 50S ribosomal protein L185.5e-0639.36Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI +  + V  AAS+ EKA+R  +++T +V AA A  +GK      L KG+ +V    +   +YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK

P52863 50S ribosomal protein L184.2e-0640.43Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK
        L +H T ++V AQVI S  + V  AAS+ EKA+R  +++T +V AA A  +GK      L KG+  V    +   +YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK

Q5E898 50S ribosomal protein L187.1e-0641.49Show/hide
Query:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK
        L +H T ++  AQVI    + V  AAS+ EKA+R  + ST + AAA A  IGKL+      KGI  V    +   +YHG++ A+ +S REAG+K
Subjt:  LKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT3G20230.1 Ribosomal L18p/L5e family protein9.5e-0626.85Show/hide
Query:  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVA
        S +S P+     ++ SFV AA +R+ +   + R             R   Y++P++L + F+ K++ A+V+H  T+ V   A++  + +R ++ S  D  
Subjt:  SFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVA

Query:  AAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGI
          A   IGKL+        + AV    ++  +  GK+  VID+++E GI
Subjt:  AAAAAKIGKLL------KGIPAVCVHLKREHKYHGKIKAVIDSVREAGI

AT3G45020.1 Ribosomal L18p/L5e family protein6.8e-0429.73Show/hide
Query:  LKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIP-----AVCVHLKREHKYHG-----KIKAVI
        LK YVL++  + KY++A V+      +   AS+ E  ++ S+E  R   A AAA +G++L      +G+       +   +K+E +  G     K+ AVI
Subjt:  LKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGKLL------KGIP-----AVCVHLKREHKYHG-----KIKAVI

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein2.8e-3772.41Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK
        MVIPP VRPPRL  YLKPYVLKMHFTNK+V AQVIHS TATVA +ASSQEKALR +M+ TRDV  AAA+KIGK      L+K IPAV + +K+E +YHGK
Subjt:  MVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVAAAAAAKIGK------LLKGIPAVCVHLKREHKYHGK

Query:  IKAVIDSVREAGIKLL
        +KAVIDSVREAG+KLL
Subjt:  IKAVIDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCA
ACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACA
AGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCT
GCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTC
TGTGAGGGAAGCAGGTATTAAGCTGCTTTGA
mRNA sequenceShow/hide mRNA sequence
AACTTAAACCCTTCGCTCTACCCTTCTCCTTCATTTCTTTCACAGCCGCTTGCCGGAACGCTCCACCGCCGATCTTCTTTCGTCTCTGCTGCAACCTCACGCCAACACCA
ACCCCGTCTTTCGTCGAGAGTAAGGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCAAGATTAACGCAGTATCTAAAGCCATATGTCTTGAAGATGCACTTCACAAACA
AGTATGTGAGCGCGCAGGTGATCCACTCCGAAACGGCCACCGTTGCTTTGGCTGCAAGCTCGCAGGAGAAGGCGCTGCGGCCGAGCATGGAGTCAACAAGGGATGTGGCT
GCTGCTGCTGCTGCAAAGATCGGGAAATTGCTTAAGGGAATCCCAGCTGTTTGTGTGCACTTGAAAAGAGAACACAAGTATCATGGTAAGATCAAAGCTGTTATTGACTC
TGTGAGGGAAGCAGGTATTAAGCTGCTTTGAATTCACTGCTCAATATTATGTGAGTTTGATGATTAGTGAGAGTAGTGTTGTTAGGTGAAGGTGTCATACGAGCATTTTT
GGGAAATAAACAATAAT
Protein sequenceShow/hide protein sequence
NLNPSLYPSPSFLSQPLAGTLHRRSSFVSAATSRQHQPRLSSRVREMVIPPPVRPPRLTQYLKPYVLKMHFTNKYVSAQVIHSETATVALAASSQEKALRPSMESTRDVA
AAAAAKIGKLLKGIPAVCVHLKREHKYHGKIKAVIDSVREAGIKLL