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Carg25049 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg25049
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontracheary element differentiation-related 7
Genome locationCarg_Chr01:8133622..8134071
RNA-Seq ExpressionCarg25049
SyntenyCarg25049
Gene Ontology termsGO:0009834 - plant-type secondary cell wall biogenesis (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044950 - Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6/7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607661.1 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 6, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6991.28Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
        MAAQNTSNLGRISPPPPPSPSPN             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
Subjt:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED

Query:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

KAG7037263.1 hypothetical protein SDJN02_00886, partial [Cucurbita argyrosperma subsp. argyrosperma]3.7e-72100Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPNGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKEH
        MAAQNTSNLGRISPPPPPSPSPNGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKEH
Subjt:  MAAQNTSNLGRISPPPPPSPSPNGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKEH

Query:  RHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        RHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  RHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

XP_022926281.1 uncharacterized protein LOC111433458 [Cucurbita moschata]5.7e-6588.97Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN---------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHI
        MAAQNTSNLGRISPPP P+             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVH+
Subjt:  MAAQNTSNLGRISPPPPPSPSPN---------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHI

Query:  DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

XP_022981645.1 uncharacterized protein LOC111480702 [Cucurbita maxima]3.6e-6789.26Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
        MAAQNTSNLGRI PPPPPSPSPN             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVI VDGHRKVHEDVAQDAHGRQAV VTIED
Subjt:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED

Query:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

XP_023521688.1 uncharacterized protein LOC111785526 [Cucurbita pepo subsp. pepo]2.5e-6889.93Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
        MAAQNTSNL RISPPPPPSPSPN             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRD+VAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
Subjt:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED

Query:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

TrEMBL top hitse value%identityAlignment
A0A0A0K4D1 Uncharacterized protein1.0e-3560.26Show/hide
Query:  MAAQNTSNLGRISPPPP-------PSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQA
        MA +N+SNL RI PPPP       P PSP+             GSCL F  FVAAA  CCFIKKR KK CP+ EV E IH+DGHRKVHEDVA+  HG+QA
Subjt:  MAAQNTSNLGRISPPPP-------PSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQA

Query:  VMVTIEDDVHIDEIAKKKEHRHGFGLHGK-HEG----SNSSTIQVPPSSST
        V+VTIEDD+HIDEI KKKEH HG GLHGK HEG    +NS+T++V  SSS+
Subjt:  VMVTIEDDVHIDEIAKKKEHRHGFGLHGK-HEG----SNSSTIQVPPSSST

A0A5D3BXC9 Proline-rich receptor-like protein kinase PERK24.3e-3458.28Show/hide
Query:  MAAQNTSNLGRISPPP-------PPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQA
        MA +N+SNL RI PPP       PP PSP+             GSCL F  FVA    CCFIKKR KK CP+ EV E I +DGHRKVHEDVA+  HG+QA
Subjt:  MAAQNTSNLGRISPPP-------PPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQA

Query:  VMVTIEDDVHIDEIAKKKEHRHGFGLHGK-HEG----SNSSTIQVPPSSST
        ++VTIEDDVHIDEI KKKEH HG GLHGK HEG    +NS+T++V  SSS+
Subjt:  VMVTIEDDVHIDEIAKKKEHRHGFGLHGK-HEG----SNSSTIQVPPSSST

A0A6J1DM43 uncharacterized protein LOC1110217151.2e-2361.9Show/hide
Query:  GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVA--QDAHGRQAVMVTIEDDVHIDEIAKKKEHRHGFG-LHGKHE-GSNSSTIQ
        G+C  FF  V AA  C  IKK+ KK C   EVAEVIHVDGHRK+HE  A     HG QAV+VTIED+V IDE+ KKKEH  G G LHGKHE G NSS+++
Subjt:  GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVA--QDAHGRQAVMVTIEDDVHIDEIAKKKEHRHGFG-LHGKHE-GSNSSTIQ

Query:  VPPSS
        V PSS
Subjt:  VPPSS

A0A6J1EEE4 uncharacterized protein LOC1114334582.8e-6588.97Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN---------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHI
        MAAQNTSNLGRISPPP P+             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVH+
Subjt:  MAAQNTSNLGRISPPPPPSPSPN---------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHI

Query:  DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

A0A6J1J036 uncharacterized protein LOC1114807021.7e-6789.26Show/hide
Query:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED
        MAAQNTSNLGRI PPPPPSPSPN             GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVI VDGHRKVHEDVAQDAHGRQAV VTIED
Subjt:  MAAQNTSNLGRISPPPPPSPSPN-------------GSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIED

Query:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
        DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS
Subjt:  DVHIDEIAKKKEHRHGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTHHQS

SwissProt top hitse value%identityAlignment
C1PGW0 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 64.8e-0637.88Show/hide
Query:  LFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDE
        +F   +AA   CC IKK   K     E  E++HVD H +VHE++ Q  +G + V +T++DD+H+ +
Subjt:  LFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDE

C1PGW1 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 7A2.6e-1237.12Show/hide
Query:  ISPPPPPSPSPNGSCL---------LFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE-HR
        I PPPPPSPS + + +         +FF   A A   CF+KK+ KK   +   AE IH D HRKV E + Q  HG +  ++++EDD+HI+E  KK E   
Subjt:  ISPPPPPSPSPNGSCL---------LFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE-HR

Query:  HGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTH
           GLH  +   N+  I     SS+   +  H
Subjt:  HGFGLHGKHEGSNSSTIQVPPSSSTLDSNVTH

Q8LBX7 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 62.4e-0533.78Show/hide
Query:  CLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE
        C++F  F+A   +   IKKR++K     E +E + VD H K+ E + +  +G+++V++++EDDV I++  K++E
Subjt:  CLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE

Q9FI79 Protein TRACHEARY ELEMENT DIFFERENTIATION-RELATED 75.4e-1038.78Show/hide
Query:  ISPPPPPSPSPNG----------SCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE
        + PPPPP+P+P              L F  F+AAA F C++KKR K        AE+I  D H KV E + Q  HG Q  +V +E+D+H+ E   K E
Subjt:  ISPPPPPSPSPNG----------SCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE

Arabidopsis top hitse value%identityAlignment
AT1G43790.1 tracheary element differentiation-related 61.7e-0633.78Show/hide
Query:  CLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE
        C++F  F+A   +   IKKR++K     E +E + VD H K+ E + +  +G+++V++++EDDV I++  K++E
Subjt:  CLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE

AT5G48920.1 tracheary element differentiation-related 73.9e-1138.78Show/hide
Query:  ISPPPPPSPSPNG----------SCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE
        + PPPPP+P+P              L F  F+AAA F C++KKR K        AE+I  D H KV E + Q  HG Q  +V +E+D+H+ E   K E
Subjt:  ISPPPPPSPSPNG----------SCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCTCAAAACACTTCCAACCTCGGACGCATATCTCCGCCTCCGCCCCCGTCCCCGTCCCCGAACGGCTCATGTCTTTTGTTCTTCACATTTGTCGCAGCTGCATT
CTTCTGTTGTTTCATCAAAAAGAGAAACAAGAAACCATGTCCACGAGACGAAGTTGCAGAGGTCATCCATGTCGATGGACACAGGAAGGTCCATGAAGATGTCGCACAAG
ACGCCCACGGGCGGCAGGCTGTGATGGTGACGATCGAGGATGATGTCCATATCGACGAAATAGCGAAGAAGAAAGAGCATAGGCATGGGTTTGGGTTGCATGGGAAGCAT
GAAGGAAGCAATTCTAGCACAATCCAAGTGCCACCATCTTCTTCAACTTTGGATTCTAATGTTACCCATCACCAATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCTCAAAACACTTCCAACCTCGGACGCATATCTCCGCCTCCGCCCCCGTCCCCGTCCCCGAACGGCTCATGTCTTTTGTTCTTCACATTTGTCGCAGCTGCATT
CTTCTGTTGTTTCATCAAAAAGAGAAACAAGAAACCATGTCCACGAGACGAAGTTGCAGAGGTCATCCATGTCGATGGACACAGGAAGGTCCATGAAGATGTCGCACAAG
ACGCCCACGGGCGGCAGGCTGTGATGGTGACGATCGAGGATGATGTCCATATCGACGAAATAGCGAAGAAGAAAGAGCATAGGCATGGGTTTGGGTTGCATGGGAAGCAT
GAAGGAAGCAATTCTAGCACAATCCAAGTGCCACCATCTTCTTCAACTTTGGATTCTAATGTTACCCATCACCAATCTTGA
Protein sequenceShow/hide protein sequence
MAAQNTSNLGRISPPPPPSPSPNGSCLLFFTFVAAAFFCCFIKKRNKKPCPRDEVAEVIHVDGHRKVHEDVAQDAHGRQAVMVTIEDDVHIDEIAKKKEHRHGFGLHGKH
EGSNSSTIQVPPSSSTLDSNVTHHQS